KEGG   PATHWAY: ssem00260
Entry
ssem00260                   Pathway                                
Name
Glycine, serine and threonine metabolism - Shewanella sedimentimangrovi
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
ssem00260  Glycine, serine and threonine metabolism
ssem00260

Module
ssem_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:ssem00260]
ssem_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:ssem00260]
ssem_M00621  Glycine cleavage system [PATH:ssem00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Shewanella sedimentimangrovi [GN:ssem]
Gene
JYB85_02680  lysC; lysine-sensitive aspartokinase 3 [KO:K00928] [EC:2.7.2.4]
JYB85_12965  aspartate kinase [KO:K00928] [EC:2.7.2.4]
JYB85_04305  thrA; bifunctional aspartate kinase/homoserine dehydrogenase I [KO:K12524] [EC:2.7.2.4 1.1.1.3]
JYB85_16135  bifunctional aspartate kinase/homoserine dehydrogenase II [KO:K12525] [EC:2.7.2.4 1.1.1.3]
JYB85_11310  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
JYB85_04310  thrB; homoserine kinase [KO:K00872] [EC:2.7.1.39]
JYB85_04315  thrC; threonine synthase [KO:K01733] [EC:4.2.3.1]
JYB85_05070  ltaE; low-specificity L-threonine aldolase [KO:K01620] [EC:4.1.2.48]
JYB85_04835  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
JYB85_17125  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
JYB85_03460  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
JYB85_06430  glycerate kinase [KO:K00865] [EC:2.7.1.165]
JYB85_00245  2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
JYB85_03295  serA; phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
JYB85_09195  serC; 3-phosphoserine/phosphohydroxythreonine transaminase [KO:K00831] [EC:2.6.1.52]
JYB85_04685  serB; phosphoserine phosphatase SerB [KO:K01079] [EC:3.1.3.3]
JYB85_00530  glycine C-acetyltransferase [KO:K00639] [EC:2.3.1.29]
JYB85_00525  tdh; L-threonine 3-dehydrogenase [KO:K00060] [EC:1.1.1.103]
JYB85_03675  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
JYB85_03665  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
JYB85_16845  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JYB85_03670  gcvH; glycine cleavage system protein GcvH [KO:K02437]
JYB85_09135  pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K00998] [EC:2.7.8.8]
JYB85_13645  pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
JYB85_07040  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
JYB85_01475  serine/threonine dehydratase [KO:K01754] [EC:4.3.1.19]
JYB85_17130  ilvA; threonine ammonia-lyase, biosynthetic [KO:K01754] [EC:4.3.1.19]
JYB85_13185  aspartate/glutamate racemase family protein [KO:K25316] [EC:5.1.1.10]
JYB85_11225  trpA; tryptophan synthase subunit alpha [KO:K01695] [EC:4.2.1.20]
JYB85_11220  trpB; tryptophan synthase subunit beta [KO:K01696] [EC:4.2.1.20]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
ssem00010  Glycolysis / Gluconeogenesis
ssem00020  Citrate cycle (TCA cycle)
ssem00230  Purine metabolism
ssem00250  Alanine, aspartate and glutamate metabolism
ssem00270  Cysteine and methionine metabolism
ssem00290  Valine, leucine and isoleucine biosynthesis
ssem00300  Lysine biosynthesis
ssem00330  Arginine and proline metabolism
ssem00460  Cyanoamino acid metabolism
ssem00470  D-Amino acid metabolism
ssem00564  Glycerophospholipid metabolism
ssem00600  Sphingolipid metabolism
ssem00620  Pyruvate metabolism
ssem00630  Glyoxylate and dicarboxylate metabolism
ssem00640  Propanoate metabolism
ssem00680  Methane metabolism
ssem00860  Porphyrin metabolism
ssem00920  Sulfur metabolism
KO pathway
ko00260   
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