KEGG   PATHWAY: ssem00230
Entry
ssem00230                   Pathway                                
Name
Purine metabolism - Shewanella sedimentimangrovi
Class
Metabolism; Nucleotide metabolism
Pathway map
ssem00230  Purine metabolism
ssem00230

Module
ssem_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:ssem00230]
ssem_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:ssem00230]
ssem_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:ssem00230]
ssem_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:ssem00230]
ssem_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:ssem00230]
Other DBs
GO: 0006163 0042278
Organism
Shewanella sedimentimangrovi [GN:ssem]
Gene
JYB85_15495  nudF; ADP-ribose diphosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
JYB85_00875  nudE; ADP compounds hydrolase NudE [KO:K08312] [EC:3.6.1.-]
JYB85_04670  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
JYB85_09320  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
JYB85_13440  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
JYB85_11280  purF; amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
JYB85_01985  purD; phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
JYB85_10470  purN; phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
JYB85_12405  purL; phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
JYB85_10465  purM; phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
JYB85_12860  purK; 5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
JYB85_12855  purE; 5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
JYB85_16275  phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
JYB85_10230  purB; adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
JYB85_01990  purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
JYB85_06970  apt; adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
JYB85_12485  5'-nucleotidase C-terminal domain-containing protein [KO:K01081] [EC:3.1.3.5]
JYB85_07565  bifunctional UDP-sugar hydrolase/5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
JYB85_13010  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
JYB85_10475  HAD-IIA family hydrolase [KO:K02566] [EC:3.1.3.5]
JYB85_00870  yrfG; GMP/IMP nucleotidase [KO:K20881] [EC:3.1.3.-]
JYB85_07005  inosine/guanosine kinase [KO:K00892] [EC:2.7.1.73]
JYB85_04675  deoD; purine-nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
JYB85_17795  pyrimidine/purine nucleoside phosphorylase [KO:K09913] [EC:2.4.2.1 2.4.2.2]
JYB85_13660  pgeF; peptidoglycan editing factor PgeF [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
JYB85_14645  hpt; hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
JYB85_12435  guaB; IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
JYB85_06935  ndk; nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
JYB85_14035  yjjX; inosine/xanthosine triphosphatase [KO:K01529] [EC:3.6.1.73]
JYB85_04945  rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase [KO:K01519] [EC:3.6.1.66]
JYB85_12430  guaA; glutamine-hydrolyzing GMP synthase [KO:K01951] [EC:6.3.5.2]
JYB85_01360  gmk; guanylate kinase [KO:K00942] [EC:2.7.4.8]
JYB85_09215  nrdA; ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
JYB85_09220  nrdB; ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
JYB85_06810  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
JYB85_09380  deoxyguanosinetriphosphate triphosphohydrolase family protein [KO:K01129] [EC:3.1.5.1]
JYB85_09375  yfbR; 5'-deoxynucleotidase [KO:K08722] [EC:3.1.3.89]
JYB85_01350  spoT; bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
JYB85_07690  Ppx/GppA family phosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
JYB85_16775  exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
JYB85_13050  relA; GTP diphosphokinase [KO:K00951] [EC:2.7.6.5]
JYB85_04090  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
JYB85_16970  class I adenylate cyclase [KO:K05851] [EC:4.6.1.1]
JYB85_15640  adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
JYB85_00465  add; adenosine deaminase [KO:K01488] [EC:3.5.4.4]
JYB85_05300  LOG family protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
JYB85_07000  adk; adenylate kinase [KO:K00939] [EC:2.7.4.3]
JYB85_13045  mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
JYB85_15485  cpdA; 3',5'-cyclic-AMP phosphodiesterase [KO:K03651] [EC:3.1.4.53]
JYB85_03410  symmetrical bis(5'-nucleosyl)-tetraphosphatase [KO:K01525] [EC:3.6.1.41]
JYB85_03185  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
JYB85_03175  cysN; sulfate adenylyltransferase subunit CysN [KO:K00956] [EC:2.7.7.4]
JYB85_03170  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
ssem00030  Pentose phosphate pathway
ssem00220  Arginine biosynthesis
ssem00250  Alanine, aspartate and glutamate metabolism
ssem00260  Glycine, serine and threonine metabolism
ssem00340  Histidine metabolism
ssem00630  Glyoxylate and dicarboxylate metabolism
ssem00730  Thiamine metabolism
ssem00740  Riboflavin metabolism
ssem00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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