KEGG   PATHWAY: stsu00020
Entry
stsu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces tsukubensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
stsu00020  Citrate cycle (TCA cycle)
stsu00020

Module
stsu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:stsu00020]
stsu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:stsu00020]
stsu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:stsu00020]
stsu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:stsu00020]
stsu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:stsu00020]
stsu_M00982  Methylcitrate cycle [PATH:stsu00020]
Other DBs
GO: 0006099
Organism
Streptomyces tsukubensis [GN:stsu]
Gene
B7R87_02425  [KO:K00031] [EC:1.1.1.42]
B7R87_07505  [KO:K00382] [EC:1.8.1.4]
B7R87_07510  [KO:K00627] [EC:2.3.1.12]
B7R87_07520  [KO:K00163] [EC:1.2.4.1]
B7R87_08540  [KO:K00163] [EC:1.2.4.1]
B7R87_09885  [KO:K01647] [EC:2.3.3.1]
B7R87_13275  [KO:K01647] [EC:2.3.3.1]
B7R87_19890  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
B7R87_19895  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
B7R87_20885  [KO:K01903] [EC:6.2.1.5]
B7R87_20890  [KO:K01902] [EC:6.2.1.5]
B7R87_20945  [KO:K00024] [EC:1.1.1.37]
B7R87_21075  [KO:K00240] [EC:1.3.5.1]
B7R87_21080  [KO:K00239] [EC:1.3.5.1]
B7R87_21085  [KO:K00242]
B7R87_21090  [KO:K00241]
B7R87_21555  [KO:K01596] [EC:4.1.1.32]
B7R87_22260  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
B7R87_22270  [KO:K01676] [EC:4.2.1.2]
B7R87_22400  [KO:K00240] [EC:1.3.5.1]
B7R87_22405  [KO:K00239] [EC:1.3.5.1]
B7R87_23205  [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
B7R87_27370  [KO:K27802]
B7R87_30500  [KO:K01659] [EC:2.3.3.5]
B7R87_31225  [KO:K00241]
B7R87_31230  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B7R87_31235  [KO:K00240] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
stsu00010  Glycolysis / Gluconeogenesis
stsu00053  Ascorbate and aldarate metabolism
stsu00061  Fatty acid biosynthesis
stsu00071  Fatty acid degradation
stsu00190  Oxidative phosphorylation
stsu00220  Arginine biosynthesis
stsu00250  Alanine, aspartate and glutamate metabolism
stsu00280  Valine, leucine and isoleucine degradation
stsu00350  Tyrosine metabolism
stsu00470  D-Amino acid metabolism
stsu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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