KEGG   PATHWAY: swf00970
Entry
swf00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Formicincola oecophyllae
Class
Genetic Information Processing; Translation
Pathway map
swf00970  Aminoacyl-tRNA biosynthesis
swf00970

Organism
Formicincola oecophyllae [GN:swf]
Gene
E3E12_00485  [KO:K01874] [EC:6.1.1.10]
E3E12_00535  [KO:K14230]
E3E12_00565  [KO:K01892] [EC:6.1.1.21]
E3E12_00625  [KO:K14228]
E3E12_00680  [KO:K01881] [EC:6.1.1.15]
E3E12_00700  [KO:K14237]
E3E12_00730  [KO:K14228]
E3E12_00830  [KO:K14232]
E3E12_00895  [KO:K14233]
E3E12_01080  [KO:K14219]
E3E12_01085  [KO:K14232]
E3E12_01095  [KO:K14220]
E3E12_01175  [KO:K14233]
E3E12_01420  trpS; tryptophan--tRNA ligase [KO:K01867] [EC:6.1.1.2]
E3E12_01440  [KO:K01890] [EC:6.1.1.20]
E3E12_01445  pheS; phenylalanine--tRNA ligase subunit alpha [KO:K01889] [EC:6.1.1.20]
E3E12_02160  [KO:K14225]
E3E12_02275  [KO:K14224]
E3E12_02425  [KO:K01869] [EC:6.1.1.4]
E3E12_02615  [KO:K14224]
E3E12_02865  [KO:K14232]
E3E12_03150  [KO:K14229]
E3E12_03245  [KO:K14221]
E3E12_03530  [KO:K01870] [EC:6.1.1.5]
E3E12_03620  [KO:K14225]
E3E12_03625  [KO:K14235]
E3E12_03665  [KO:K14234]
E3E12_03725  [KO:K01866] [EC:6.1.1.1]
E3E12_03905  [KO:K14223]
E3E12_04055  [KO:K14229]
E3E12_04150  [KO:K14218]
E3E12_04265  [KO:K14231]
E3E12_04445  [KO:K14218]
E3E12_04745  [KO:K14225]
E3E12_04770  [KO:K14230]
E3E12_04790  [KO:K14228]
E3E12_04965  thrS; threonine--tRNA ligase [KO:K01868] [EC:6.1.1.3]
E3E12_05045  [KO:K14226]
E3E12_05125  [KO:K14228]
E3E12_05320  [KO:K14234]
E3E12_05360  [KO:K14236]
E3E12_05415  [KO:K01885] [EC:6.1.1.17]
E3E12_05700  [KO:K14225]
E3E12_05925  [KO:K14219]
E3E12_06185  [KO:K01879] [EC:6.1.1.14]
E3E12_06190  [KO:K01878] [EC:6.1.1.14]
E3E12_06205  aspS; aspartate--tRNA ligase [KO:K01876] [EC:6.1.1.12]
E3E12_06225  [KO:K01887] [EC:6.1.1.19]
E3E12_06245  serS; serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
E3E12_06295  [KO:K01885] [EC:6.1.1.17]
E3E12_06310  [KO:K01883] [EC:6.1.1.16]
E3E12_06345  alaS; alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
E3E12_06545  [KO:K00604] [EC:2.1.2.9]
E3E12_06580  [KO:K14228]
E3E12_06760  [KO:K04566] [EC:6.1.1.6]
E3E12_06860  [KO:K14219]
E3E12_06865  [KO:K14219]
E3E12_07055  [KO:K14223]
E3E12_07060  [KO:K14223]
E3E12_07315  [KO:K14237]
E3E12_07460  [KO:K14234]
E3E12_07635  [KO:K14237]
E3E12_08195  gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [KO:K02434] [EC:6.3.5.6 6.3.5.7]
E3E12_08200  gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA [KO:K02433] [EC:6.3.5.6 6.3.5.7]
E3E12_08205  gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC [KO:K02435] [EC:6.3.5.6 6.3.5.7]
E3E12_08220  [KO:K14222]
E3E12_08330  [KO:K14233]
E3E12_08440  [KO:K01873] [EC:6.1.1.9]
E3E12_08530  [KO:K14233]
E3E12_08590  [KO:K14230]
E3E12_08605  [KO:K14218]
E3E12_08610  [KO:K14227]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
swf00250  Alanine, aspartate and glutamate metabolism
swf00260  Glycine, serine and threonine metabolism
swf00270  Cysteine and methionine metabolism
swf00290  Valine, leucine and isoleucine biosynthesis
swf00300  Lysine biosynthesis
swf00330  Arginine and proline metabolism
swf00340  Histidine metabolism
swf00380  Tryptophan metabolism
swf00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   

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