KEGG   PATHWAY: val04120
Entry
val04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Verticillium alfalfae
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
val04120  Ubiquitin mediated proteolysis
val04120

Other DBs
GO: 0016567
Organism
Verticillium alfalfae [GN:val]
Gene
VDBG_00752  ubiquitin-60S ribosomal protein L40 fusion protein [KO:K02927]
VDBG_03557  ubiquitin-40S ribosomal protein S31 fusion protein [KO:K02977]
VDBG_00811  hypothetical protein [KO:K03178] [EC:6.2.1.45]
VDBG_08745  DNA damage tolerance protein rad31 [KO:K10684] [EC:6.2.1.45]
VDBG_05540  SUMO-activating enzyme subunit uba-2 [KO:K10685] [EC:6.2.1.45]
VDBG_04701  NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
VDBG_04353  ubiquitin-conjugating enzyme [KO:K10573] [EC:2.3.2.23]
VDBG_03743  ubiquitin-conjugating enzyme [KO:K06688] [EC:2.3.2.23]
VDBG_03456  ubiquitin-conjugating enzyme [KO:K06689] [EC:2.3.2.23]
VDBG_01101  ubiquitin-conjugating enzyme [KO:K10575] [EC:2.3.2.23]
VDBG_06606  ubiquitin-conjugating enzyme [KO:K04555] [EC:2.3.2.23]
VDBG_08163  ubiquitin-conjugating enzyme [KO:K10576] [EC:2.3.2.23]
VDBG_00656  SUMO-conjugating enzyme ubc9 [KO:K10577]
VDBG_00021  ubiquitin-conjugating enzyme [KO:K10578] [EC:2.3.2.23]
VDBG_09516  ubiquitin-conjugating enzyme [KO:K04649] [EC:2.3.2.23]
VDBG_00303  NEDD8-conjugating enzyme UBC12 [KO:K10579] [EC:2.3.2.34]
VDBG_01677  ubiquitin-conjugating enzyme [KO:K10580] [EC:2.3.2.23]
VDBG_00203  ubiquitin-conjugating enzyme [KO:K02207] [EC:2.3.2.23]
VDBG_04934  ubiquitin-conjugating enzyme [KO:K10688] [EC:2.3.2.23 2.3.2.25]
VDBG_04650  ubiquitin-conjugating enzyme [KO:K10585] [EC:2.3.2.23]
VDBG_08134  ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
VDBG_07910  E3 ubiquitin-protein ligase UPL3 [KO:K10590] [EC:2.3.2.26]
VDBG_00464  E3 ubiquitin-protein ligase pub1 [KO:K10591] [EC:2.3.2.26]
VDBG_05258  E3 ubiquitin-protein ligase [KO:K10592] [EC:2.3.2.26]
VDBG_05796  ubiquitin conjugation factor E4 [KO:K10597] [EC:2.3.2.27]
VDBG_01352  hypothetical protein [KO:K09561] [EC:2.3.2.27]
VDBG_06988  peptidyl-prolyl cis-trans isomerase cyp8 [KO:K10598] [EC:5.2.1.8]
VDBG_07798  cell cycle control protein cwf8 [KO:K10599] [EC:2.3.2.27]
VDBG_08656  MIZ zinc finger protein [KO:K04706] [EC:2.3.2.-]
VDBG_09362  E3 ubiquitin-protein ligase HRD1 [KO:K10601] [EC:2.3.2.27]
VDBG_08639  RING-box protein [KO:K03868] [EC:2.3.2.32]
VDBG_06727  S-phase kinase-associated protein 1A [KO:K03094]
VDBG_02862  F-box/WD repeat-containing protein 1A [KO:K03362]
VDBG_10030  cell division control protein [KO:K03361]
VDBG_08695  F-box/WD repeat-containing protein [KO:K03361]
VDBG_02521  sulfur controller 2 [KO:K10259]
VDBG_09051  SCF E3 ubiquitin ligase complex F-box protein grrA [KO:K03360]
VDBG_01545  hypothetical protein [KO:K03872]
VDBG_05035  cullin-3 [KO:K03869]
VDBG_06832  cullin-4B [KO:K10609]
VDBG_01185  DNA damage-binding protein 1b [KO:K10610]
VDBG_00552  DNA excision repair protein ERCC-8 [KO:K10570]
VDBG_04463  anaphase-promoting complex subunit 2 [KO:K03349]
VDBG_07382  WD repeat-containing protein slp1 [KO:K03363]
VDBG_09345  WD repeat-containing protein srw1 [KO:K03364]
VDBG_03431  PC_rep repeat-containing protein [KO:K03348]
VDBG_06806  bimA [KO:K03350]
VDBG_08709  hypothetical protein [KO:K03351]
VDBG_01989  anaphase-promoting complex protein [KO:K03352]
VDBG_04104  anaphase-promoting complex subunit cut9 [KO:K03353]
VDBG_00245  anaphase-promoting complex subunit 8 [KO:K03355]
VDBG_05444  anaphase-promoting complex subunit 10 [KO:K03357]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
val03050  Proteasome
KO pathway
ko04120   
LinkDB

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