KEGG   PATHWAY: veu00020
Entry
veu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vibrio europaeus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
veu00020  Citrate cycle (TCA cycle)
veu00020

Module
veu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:veu00020]
veu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:veu00020]
veu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:veu00020]
veu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:veu00020]
veu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:veu00020]
veu_M00982  Methylcitrate cycle [PATH:veu00020]
Other DBs
GO: 0006099
Organism
Vibrio europaeus [GN:veu]
Gene
IXK98_01055  [KO:K01679] [EC:4.2.1.2]
IXK98_09040  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
IXK98_10905  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
IXK98_10910  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
IXK98_10915  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IXK98_11000  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
IXK98_12580  [KO:K01647] [EC:2.3.3.1]
IXK98_12585  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
IXK98_12590  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
IXK98_12595  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IXK98_12600  [KO:K00240] [EC:1.3.5.1]
IXK98_12605  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
IXK98_12610  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
IXK98_12615  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IXK98_12620  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IXK98_13730  [KO:K00031] [EC:1.1.1.42]
IXK98_15655  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
IXK98_17555  [KO:K01676] [EC:4.2.1.2]
IXK98_22050  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IXK98_22995  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
IXK98_23000  [KO:K00245] [EC:1.3.5.1]
IXK98_23005  frdC; fumarate reductase subunit FrdC [KO:K00246]
IXK98_23010  frdD; fumarate reductase subunit FrdD [KO:K00247]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
veu00010  Glycolysis / Gluconeogenesis
veu00053  Ascorbate and aldarate metabolism
veu00061  Fatty acid biosynthesis
veu00071  Fatty acid degradation
veu00190  Oxidative phosphorylation
veu00220  Arginine biosynthesis
veu00250  Alanine, aspartate and glutamate metabolism
veu00280  Valine, leucine and isoleucine degradation
veu00350  Tyrosine metabolism
veu00470  D-Amino acid metabolism
veu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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