KEGG   PATHWAY: vvl00260
Entry
vvl00260                    Pathway                                
Name
Glycine, serine and threonine metabolism - Vibrio vulnificus 93U204
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
vvl00260  Glycine, serine and threonine metabolism
vvl00260

Module
vvl_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:vvl00260]
vvl_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:vvl00260]
vvl_M00555  Betaine biosynthesis, choline => betaine [PATH:vvl00260]
vvl_M00621  Glycine cleavage system [PATH:vvl00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Vibrio vulnificus 93U204 [GN:vvl]
Gene
VV93_v1c25130  aspartate kinase [KO:K00928] [EC:2.7.2.4]
VV93_v1c26810  aspartate kinase III [KO:K00928] [EC:2.7.2.4]
VV93_v1c05890  thrA; bifunctional aspartokinase I/homoserine dehydrogenase I [KO:K12524] [EC:2.7.2.4 1.1.1.3]
VV93_v1c27350  metL; bifunctional aspartate kinase II/homoserine dehydrogenase II [KO:K12525] [EC:2.7.2.4 1.1.1.3]
VV93_v1c21300  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
VV93_v1c10910  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
VV93_v1c05900  homoserine kinase [KO:K00872] [EC:2.7.1.39]
VV93_v1c05910  threonine synthase [KO:K01733] [EC:4.2.3.1]
VV93_v1c35640  threonine aldolase [KO:K01620] [EC:4.1.2.48]
VV93_v1c36920  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
VV93_v1c08350  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
VV93_v1c26800  class V aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
VV93_v1c26460  D-lactate dehydrogenase [KO:K00018] [EC:1.1.1.29]
VV93_v1c24650  glycerate kinase [KO:K00865] [EC:2.7.1.165]
VV93_v1c28100  phosphoglyceromutase [KO:K15633] [EC:5.4.2.12]
VV93_v1c25590  D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
VV93_v1c43670  phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
VV93_v1c13630  phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
VV93_v1c23950  serB; phosphoserine phosphatase [KO:K01079] [EC:3.1.3.3]
VV93_v1c32910  2-amino-3-ketobutyrate CoA ligase [KO:K00639] [EC:2.3.1.29]
VV93_v1c32920  tdh; L-threonine 3-dehydrogenase [KO:K00060] [EC:1.1.1.103]
VV93_v1c36900  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
VV93_v1c36940  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
VV93_v1c24830  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
VV93_v1c36910  glycine cleavage system protein H [KO:K02437]
VV93_v1c28880  pssA; phosphatidylserine synthase [KO:K00998] [EC:2.7.8.8]
VV93_v1c35150  choline dehydrogenase [KO:K00108] [EC:1.1.99.1]
VV93_v1c35140  betaine aldehyde dehydrogenase [KO:K00130] [EC:1.2.1.8]
VV93_v1c18490  L-serine deaminase [KO:K01752] [EC:4.3.1.17]
VV93_v1c34670  L-serine dehydratase [KO:K01752] [EC:4.3.1.17]
VV93_v1c29660  threonine dehydratase [KO:K01754] [EC:4.3.1.19]
VV93_v1c39720  alr; alanine racemase [KO:K25317] [EC:5.1.1.10]
VV93_v1c11340  trpA; tryptophan synthase subunit alpha [KO:K01695] [EC:4.2.1.20]
VV93_v1c11350  trpB; tryptophan synthase subunit beta [KO:K01696] [EC:4.2.1.20]
VV93_v1c11560  diaminobutyrate-pyruvate transaminase/L-2,4-diaminobutyrate decarboxylase [KO:K00836] [EC:2.6.1.76]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
vvl00010  Glycolysis / Gluconeogenesis
vvl00020  Citrate cycle (TCA cycle)
vvl00230  Purine metabolism
vvl00250  Alanine, aspartate and glutamate metabolism
vvl00270  Cysteine and methionine metabolism
vvl00290  Valine, leucine and isoleucine biosynthesis
vvl00300  Lysine biosynthesis
vvl00330  Arginine and proline metabolism
vvl00460  Cyanoamino acid metabolism
vvl00470  D-Amino acid metabolism
vvl00564  Glycerophospholipid metabolism
vvl00600  Sphingolipid metabolism
vvl00620  Pyruvate metabolism
vvl00630  Glyoxylate and dicarboxylate metabolism
vvl00640  Propanoate metabolism
vvl00680  Methane metabolism
vvl00860  Porphyrin metabolism
vvl00920  Sulfur metabolism
KO pathway
ko00260   
LinkDB

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