KEGG   PATHWAY: xax00020
Entry
xax00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Xanthomonas euvesicatoria pv. citrumelo F1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
xax00020  Citrate cycle (TCA cycle)
xax00020

Module
xax_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:xax00020]
xax_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:xax00020]
xax_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:xax00020]
xax_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:xax00020]
xax_M00982  Methylcitrate cycle [PATH:xax00020]
Other DBs
GO: 0006099
Organism
Xanthomonas euvesicatoria pv. citrumelo F1 [GN:xax]
Gene
XACM_0567  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
XACM_0988  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
XACM_1027  [KO:K00030] [EC:1.1.1.41]
XACM_1104  [KO:K01659] [EC:2.3.3.5]
XACM_1449  [KO:K01676] [EC:4.2.1.2]
XACM_1504  ldp; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
XACM_1505  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
XACM_1506  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
XACM_1513  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
XACM_1904  acnA; aconitate hydratase [KO:K27802]
XACM_1907  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
XACM_2182  [KO:K00241]
XACM_2183  [KO:K00242]
XACM_2184  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
XACM_2186  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
XACM_3133  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
XACM_3134  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
XACM_3276  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
XACM_3554  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
XACM_3556  [KO:K00627] [EC:2.3.1.12]
XACM_3737  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
xax00010  Glycolysis / Gluconeogenesis
xax00053  Ascorbate and aldarate metabolism
xax00061  Fatty acid biosynthesis
xax00071  Fatty acid degradation
xax00190  Oxidative phosphorylation
xax00220  Arginine biosynthesis
xax00250  Alanine, aspartate and glutamate metabolism
xax00280  Valine, leucine and isoleucine degradation
xax00350  Tyrosine metabolism
xax00470  D-Amino acid metabolism
xax00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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