KEGG   PATHWAY: zof00240
Entry
zof00240                    Pathway                                
Name
Pyrimidine metabolism - Zingiber officinale (ginger)
Class
Metabolism; Nucleotide metabolism
Pathway map
zof00240  Pyrimidine metabolism
zof00240

Module
zof_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:zof00240]
zof_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:zof00240]
zof_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:zof00240]
zof_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:zof00240]
Other DBs
GO: 0006220 0006213
Organism
Zingiber officinale (ginger) [GN:zof]
Gene
122051211  carbamoyl-phosphate synthase large chain, chloroplastic-like [KO:K01955] [EC:6.3.5.5]
122055872  carbamoyl-phosphate synthase large chain, chloroplastic-like [KO:K01955] [EC:6.3.5.5]
122055875  carbamoyl-phosphate synthase large chain, chloroplastic-like [KO:K01955] [EC:6.3.5.5]
122026878  carbamoyl-phosphate synthase small chain, chloroplastic-like [KO:K01956] [EC:6.3.5.5]
122029314  carbamoyl-phosphate synthase small chain, chloroplastic-like [KO:K01956] [EC:6.3.5.5]
121974967  aspartate carbamoyltransferase, chloroplastic-like [KO:K00609] [EC:2.1.3.2]
121969847  aspartate carbamoyltransferase, chloroplastic-like [KO:K00609] [EC:2.1.3.2]
121979002  dihydroorotase, mitochondrial-like isoform X1 [KO:K01465] [EC:3.5.2.3]
122037874  dihydroorotase, mitochondrial-like isoform X1 [KO:K01465] [EC:3.5.2.3]
122030000  dihydroorotate dehydrogenase (quinone), mitochondrial-like [KO:K00254] [EC:1.3.5.2]
121971398  dihydroorotate dehydrogenase (quinone), mitochondrial-like [KO:K00254] [EC:1.3.5.2]
122037447  uridine 5'-monophosphate synthase-like [KO:K13421] [EC:2.4.2.10 4.1.1.23]
122037818  uridine 5'-monophosphate synthase-like [KO:K13421] [EC:2.4.2.10 4.1.1.23]
121974527  UMP-CMP kinase 4-like [KO:K13800] [EC:2.7.4.14]
121988373  UMP-CMP kinase 3-like isoform X1 [KO:K13800] [EC:2.7.4.14]
122025730  UMP-CMP kinase 3-like isoform X1 [KO:K13800] [EC:2.7.4.14]
122026245  UMP-CMP kinase 3-like [KO:K13800] [EC:2.7.4.14]
122007141  UMP-CMP kinase 3-like isoform X1 [KO:K13800] [EC:2.7.4.14]
122029364  UMP-CMP kinase 3-like isoform X1 [KO:K13800] [EC:2.7.4.14]
121997276  UMP-CMP kinase 3-like isoform X1 [KO:K13800] [EC:2.7.4.14]
121969410  UMP-CMP kinase 4-like [KO:K13800] [EC:2.7.4.14]
122021618  UMP-CMP kinase 3-like isoform X1 [KO:K13800] [EC:2.7.4.14]
122053182  UMP-CMP kinase 3-like [KO:K13800] [EC:2.7.4.14]
122002870  UMP-CMP kinase 3-like isoform X1 [KO:K13800] [EC:2.7.4.14]
122020608  uridylate kinase-like [KO:K09903] [EC:2.7.4.22]
122024434  uridylate kinase-like [KO:K09903] [EC:2.7.4.22]
122027203  nucleoside diphosphate kinase-like isoform X1 [KO:K00940] [EC:2.7.4.6]
121976413  nucleoside diphosphate kinase B-like [KO:K00940] [EC:2.7.4.6]
122045263  nucleoside diphosphate kinase 3-like [KO:K00940] [EC:2.7.4.6]
122029622  nucleoside diphosphate kinase-like [KO:K00940] [EC:2.7.4.6]
121982624  nucleoside diphosphate kinase 3-like [KO:K00940] [EC:2.7.4.6]
121984835  nucleoside diphosphate kinase 1 isoform X1 [KO:K00940] [EC:2.7.4.6]
121971261  nucleoside diphosphate kinase B [KO:K00940] [EC:2.7.4.6]
121985197  nucleoside diphosphate kinase 1-like [KO:K00940] [EC:2.7.4.6]
122038431  nucleoside diphosphate kinase B-like [KO:K00940] [EC:2.7.4.6]
121987249  nucleoside diphosphate kinase 3-like [KO:K00940] [EC:2.7.4.6]
122040729  nucleoside diphosphate kinase 3-like [KO:K00940] [EC:2.7.4.6]
121980423  uncharacterized protein LOC121980423 [KO:K00940] [EC:2.7.4.6]
122005656  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
122008407  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
122001358  probable apyrase 6 isoform X1 [KO:K01510] [EC:3.6.1.5]
122015331  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
122044992  probable apyrase 1 [KO:K14641] [EC:3.6.1.5]
122006798  probable apyrase 1 [KO:K14641] [EC:3.6.1.5]
122012582  probable apyrase 1 [KO:K14641] [EC:3.6.1.5]
122014787  probable apyrase 1 [KO:K14641] [EC:3.6.1.5]
122002551  probable apyrase 1 [KO:K14641] [EC:3.6.1.5]
122040469  probable apyrase 2 [KO:K14641] [EC:3.6.1.5]
122005045  venom phosphodiesterase 2-like [KO:K01513] [EC:3.1.4.1 3.6.1.9]
122009921  venom phosphodiesterase-like [KO:K01513] [EC:3.1.4.1 3.6.1.9]
122020660  venom phosphodiesterase 2-like [KO:K01513] [EC:3.1.4.1 3.6.1.9]
122020793  venom phosphodiesterase 2-like [KO:K01513] [EC:3.1.4.1 3.6.1.9]
122052099  venom phosphodiesterase 2-like [KO:K01513] [EC:3.1.4.1 3.6.1.9]
122052235  venom phosphodiesterase 2-like [KO:K01513] [EC:3.1.4.1 3.6.1.9]
122000756  venom phosphodiesterase 2-like [KO:K01513] [EC:3.1.4.1 3.6.1.9]
122041758  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
121988529  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
122026973  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
121977174  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
122046283  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
122009885  CTP synthase-like isoform X1 [KO:K01937] [EC:6.3.4.2]
122032138  CTP synthase-like isoform X1 [KO:K01937] [EC:6.3.4.2]
121981225  CTP synthase-like isoform X1 [KO:K01937] [EC:6.3.4.2]
121981762  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
121997411  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
122034508  CTP synthase 1-like [KO:K01937] [EC:6.3.4.2]
122012458  CTP synthase 1-like isoform X1 [KO:K01937] [EC:6.3.4.2]
121985100  CTP synthase-like isoform X1 [KO:K01937] [EC:6.3.4.2]
122015264  CTP synthase 1-like isoform X1 [KO:K01937] [EC:6.3.4.2]
122015325  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
122038118  CTP synthase 1-like isoform X1 [KO:K01937] [EC:6.3.4.2]
121972157  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
122042495  uridine kinase-like protein 1, chloroplastic [KO:K00876] [EC:2.7.1.48]
122005010  inorganic pyrophosphatase TTM2-like [KO:K00876] [EC:2.7.1.48]
121976331  uridine kinase-like protein 4 [KO:K00876] [EC:2.7.1.48]
121991656  inorganic pyrophosphatase TTM2-like isoform X1 [KO:K00876] [EC:2.7.1.48]
122045484  uridine kinase-like protein 1, chloroplastic [KO:K00876] [EC:2.7.1.48]
121992194  inorganic pyrophosphatase TTM1-like isoform X1 [KO:K00876] [EC:2.7.1.48]
122008602  uridine kinase-like protein 2, chloroplastic [KO:K00876] [EC:2.7.1.48]
122047001  uridine kinase-like protein 1, chloroplastic [KO:K00876] [EC:2.7.1.48]
122031871  inorganic pyrophosphatase TTM2-like [KO:K00876] [EC:2.7.1.48]
121996134  inorganic pyrophosphatase TTM2-like [KO:K00876] [EC:2.7.1.48]
122010394  uridine kinase-like protein 3 [KO:K00876] [EC:2.7.1.48]
122010395  uridine kinase-like protein 3 [KO:K00876] [EC:2.7.1.48]
122049618  uridine kinase-like protein 3 [KO:K00876] [EC:2.7.1.48]
122035256  uridine kinase-like protein 4 [KO:K00876] [EC:2.7.1.48]
122000720  inorganic pyrophosphatase TTM2-like [KO:K00876] [EC:2.7.1.48]
122001140  inorganic pyrophosphatase TTM2-like [KO:K00876] [EC:2.7.1.48]
122015814  uridine kinase-like protein 2, chloroplastic [KO:K00876] [EC:2.7.1.48]
122038961  inorganic pyrophosphatase TTM2-like isoform X1 [KO:K00876] [EC:2.7.1.48]
122038962  inorganic pyrophosphatase TTM2-like isoform X1 [KO:K00876] [EC:2.7.1.48]
122040974  uridine kinase-like protein 1, chloroplastic [KO:K00876] [EC:2.7.1.48]
122041716  5'-nucleotidase SurE-like [KO:K03787] [EC:3.1.3.5 3.1.3.6]
121976338  5'-nucleotidase SurE-like [KO:K03787] [EC:3.1.3.5 3.1.3.6]
122045483  5'-nucleotidase SurE-like [KO:K03787] [EC:3.1.3.5 3.1.3.6]
122046237  5'-nucleotidase SurE-like [KO:K03787] [EC:3.1.3.5 3.1.3.6]
121971328  5'-nucleotidase SurE-like [KO:K03787] [EC:3.1.3.5 3.1.3.6]
122041255  probable uridine nucleosidase 2 [KO:K01240] [EC:3.2.2.3]
122045739  probable uridine nucleosidase 2 [KO:K01240] [EC:3.2.2.3]
121993034  probable uridine nucleosidase 1 [KO:K01240] [EC:3.2.2.3]
121982012  probable uridine nucleosidase 1 [KO:K01240] [EC:3.2.2.3]
121997026  probable uridine nucleosidase 1 [KO:K01240] [EC:3.2.2.3]
121985883  probable uridine nucleosidase 1 [KO:K01240] [EC:3.2.2.3]
121990414  uracil phosphoribosyltransferase-like [KO:K00761] [EC:2.4.2.9]
121994225  uracil phosphoribosyltransferase-like [KO:K00761] [EC:2.4.2.9]
122021208  uracil phosphoribosyltransferase-like [KO:K00761] [EC:2.4.2.9]
122024702  uracil phosphoribosyltransferase-like [KO:K00761] [EC:2.4.2.9]
122005737  pseudouridine-5'-phosphate glycosidase-like isoform X1 [KO:K16329] [EC:4.2.1.70]
122001434  pseudouridine-5'-phosphate glycosidase-like isoform X1 [KO:K16329] [EC:4.2.1.70]
121989598  7-methylguanosine phosphate-specific 5'-nucleotidase A-like [KO:K24242] [EC:3.1.3.91]
121998538  7-methylguanosine phosphate-specific 5'-nucleotidase A-like [KO:K24242] [EC:3.1.3.91]
121981884  cytidine deaminase 1-like [KO:K01489] [EC:3.5.4.5]
122011414  cytidine deaminase 1-like [KO:K01489] [EC:3.5.4.5]
121985729  cytidine deaminase 1-like [KO:K01489] [EC:3.5.4.5]
122016009  cytidine deaminase 1-like [KO:K01489] [EC:3.5.4.5]
121988619  ribonucleoside-diphosphate reductase large subunit-like [KO:K10807] [EC:1.17.4.1]
121991862  ribonucleoside-diphosphate reductase large subunit-like [KO:K10807] [EC:1.17.4.1]
121992211  ribonucleoside-diphosphate reductase large subunit-like [KO:K10807] [EC:1.17.4.1]
121996149  ribonucleoside-diphosphate reductase large subunit-like [KO:K10807] [EC:1.17.4.1]
121997500  ribonucleoside-diphosphate reductase large subunit-like isoform X1 [KO:K10807] [EC:1.17.4.1]
122038993  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
121987902  ribonucleoside-diphosphate reductase small chain-like [KO:K10808] [EC:1.17.4.1]
122026089  ribonucleoside-diphosphate reductase small chain-like [KO:K10808] [EC:1.17.4.1]
122026146  ribonucleoside-diphosphate reductase small chain-like [KO:K10808] [EC:1.17.4.1]
122028565  ribonucleoside-diphosphate reductase small chain-like [KO:K10808] [EC:1.17.4.1]
122028587  ribonucleoside-diphosphate reductase small chain-like [KO:K10808] [EC:1.17.4.1]
122050308  ribonucleoside-diphosphate reductase small chain-like [KO:K10808] [EC:1.17.4.1]
121982222  ribonucleoside-diphosphate reductase small chain-like [KO:K10808] [EC:1.17.4.1]
121982234  ribonucleoside-diphosphate reductase small chain-like [KO:K10808] [EC:1.17.4.1]
121983346  ribonucleoside-diphosphate reductase small chain-like [KO:K10808] [EC:1.17.4.1]
122054747  ribonucleoside-diphosphate reductase small chain C-like [KO:K10808] [EC:1.17.4.1]
122055332  ribonucleoside-diphosphate reductase small chain-like [KO:K10808] [EC:1.17.4.1]
121986119  ribonucleoside-diphosphate reductase small chain-like [KO:K10808] [EC:1.17.4.1]
122025421  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
122019008  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
122044089  uncharacterized protein LOC122044089 [KO:K16904] [EC:3.6.1.12]
121982896  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
122020935  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
122021726  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
122023935  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
121987467  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
122024740  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
122027049  5'-deoxynucleotidase HDDC2-like [KO:K07023] [EC:3.1.3.89]
121976559  5'-deoxynucleotidase HDDC2-like isoform X1 [KO:K07023] [EC:3.1.3.89]
122028784  5'-deoxynucleotidase HDDC2-like [KO:K07023] [EC:3.1.3.89]
122032241  5'-deoxynucleotidase HDDC2-like isoform X1 [KO:K07023] [EC:3.1.3.89]
122033587  5'-deoxynucleotidase HDDC2-like [KO:K07023] [EC:3.1.3.89]
121971105  5'-deoxynucleotidase HDDC2-like isoform X1 [KO:K07023] [EC:3.1.3.89]
122053316  deoxycytidylate deaminase isoform X1 [KO:K01493] [EC:3.5.4.12]
122006885  thymidylate kinase-like isoform X1 [KO:K00943] [EC:2.7.4.9]
122036459  thymidylate kinase-like isoform X1 [KO:K00943] [EC:2.7.4.9]
122006725  deoxyuridine 5'-triphosphate nucleotidohydrolase-like [KO:K01520] [EC:3.6.1.23]
121978149  deoxyuridine 5'-triphosphate nucleotidohydrolase-like [KO:K01520] [EC:3.6.1.23]
122046630  deoxyuridine 5'-triphosphate nucleotidohydrolase-like [KO:K01520] [EC:3.6.1.23]
121994589  deoxyuridine 5'-triphosphate nucleotidohydrolase-like [KO:K01520] [EC:3.6.1.23]
122000482  deoxyuridine 5'-triphosphate nucleotidohydrolase-like [KO:K01520] [EC:3.6.1.23]
122015079  deoxyuridine 5'-triphosphate nucleotidohydrolase-like [KO:K01520] [EC:3.6.1.23]
122040105  probable deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
122043956  thymidine kinase-like [KO:K00857] [EC:2.7.1.21]
122046679  thymidine kinase [KO:K00857] [EC:2.7.1.21]
121969761  thymidine kinase-like [KO:K00857] [EC:2.7.1.21]
121998301  thymidine kinase-like [KO:K00857] [EC:2.7.1.21]
121988359  putative bifunctional dihydrofolate reductase-thymidylate synthase [KO:K13998] [EC:1.5.1.3 2.1.1.45]
122038701  putative bifunctional dihydrofolate reductase-thymidylate synthase [KO:K13998] [EC:1.5.1.3 2.1.1.45]
122056573  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic-like [KO:K00207] [EC:1.3.1.2]
122052057  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic-like [KO:K00207] [EC:1.3.1.2]
121967773  dihydropyrimidinase-like isoform X1 [KO:K01464] [EC:3.5.2.2]
122053010  dihydropyrimidinase-like isoform X1 [KO:K01464] [EC:3.5.2.2]
122045510  beta-ureidopropionase-like [KO:K01431] [EC:3.5.1.6]
122041001  beta-ureidopropionase-like [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
zof00030  Pentose phosphate pathway
zof00220  Arginine biosynthesis
zof00250  Alanine, aspartate and glutamate metabolism
zof00280  Valine, leucine and isoleucine degradation
zof00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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