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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:nml03030]
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03410 Base excision repair [PATH:nml03410]
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03420 Nucleotide excision repair [PATH:nml03420]
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03430 Mismatch repair [PATH:nml03430]
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03440 Homologous recombination [PATH:nml03440]
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03450 Non-homologous end-joining [PATH:nml03450]
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 Namu_0127 Ku protein
Namu_0128 DNA polymerase LigD, polymerase domain protein
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K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:nml03000]
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03021 Transcription machinery [BR:nml03021]
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03019 Messenger RNA biogenesis [BR:nml03019]
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03041 Spliceosome
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03011 Ribosome [BR:nml03011]
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03009 Ribosome biogenesis [BR:nml03009]
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03016 Transfer RNA biogenesis [BR:nml03016]
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03012 Translation factors [BR:nml03012]
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03110 Chaperones and folding catalysts [BR:nml03110]
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04131 Membrane trafficking [BR:nml04131]
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04121 Ubiquitin system [BR:nml04121]
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03051 Proteasome [BR:nml03051]
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03032 DNA replication proteins [BR:nml03032]
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03036 Chromosome and associated proteins [BR:nml03036]
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03400 DNA repair and recombination proteins [BR:nml03400]
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Namu_0796 methylated-DNA/protein-cysteinemethyltransferase
Namu_4436 methylated-DNA/protein-cysteinemethyltransferase
Namu_4704 Deoxyribodipyrimidine photo-lyase
Namu_1489 uracil-DNA glycosylase
Namu_4123 DNA-3-methyladenine glycosylase
Namu_0860 HhH-GPD family protein
Namu_0720 endonuclease III
Namu_4794 helicase domain protein
Namu_0149 NUDIX hydrolase
Namu_0631 NUDIX hydrolase
Namu_1264 NUDIX hydrolase
Namu_3845 NUDIX hydrolase
Namu_4321 NUDIX hydrolase
Namu_4360 NUDIX hydrolase
Namu_2791 deoxyribodipyrimidine photolyase-related protein
Namu_0939 Uracil-DNA glycosylase superfamily
Namu_5298 Uracil-DNA glycosylase superfamily
Namu_0595 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase-like protein
Namu_2148 DNA-3-methyladenine glycosylase I
Namu_0210 DNA-(apurinic or apyrimidinic site) lyase
Namu_1884 formamidopyrimidine-DNA glycosylase
Namu_2416 DNA-formamidopyrimidine glycosylase
Namu_0817 Formamidopyrimidine-DNA glycosylase catalytic domain protein
Namu_3153 exodeoxyribonuclease III Xth
Namu_0060 Xylose isomerase domain protein TIM barrel
Namu_1450 DNA ligase, NAD-dependent
Namu_2992 excinuclease ABC, A subunit
Namu_3030 excinuclease ABC, B subunit
Namu_2796 excinuclease ABC, C subunit
Namu_0594 UvrD/REP helicase
Namu_1258 ATP-dependent DNA helicase PcrA
Namu_1585 UvrD/REP helicase
Namu_2144 UvrD/REP helicase
Namu_1063 DNA-directed RNA polymerase, beta subunit
Namu_1064 DNA-directed RNA polymerase, beta' subunit
Namu_1172 DNA-directed RNA polymerase, alpha subunit
Namu_4161 DNA-directed RNA polymerase, omega subunit
Namu_4525 transcription-repair coupling factor
Namu_4389 exodeoxyribonuclease VII, large subunit
Namu_4390 exodeoxyribonuclease VII, small subunit
Namu_2748 DNA polymerase III, alpha subunit
Namu_3172 DNA polymerase III, alpha subunit
Namu_0002 DNA polymerase III, beta subunit
Namu_1551 DNA polymerase III, delta subunit
Namu_0743 DNA-directed DNA polymerase
Namu_3243 DNA polymerase III, epsilon subunit
Namu_0649 DNA polymerase III, subunits gamma and tau
Namu_0457 single-strand binding protein
Namu_1811 single-strand binding protein
Namu_1958 single-strand binding protein
Namu_2746 single-strand binding protein
Namu_5368 single-strand binding protein
Namu_3907 exodeoxyribonuclease V, beta subunit
Namu_3908 exodeoxyribonuclease V, gamma subunit
Namu_2772 Exodeoxyribonuclease V
Namu_3906 exodeoxyribonuclease V, alpha subunit
Namu_3994 recA protein
Namu_3395 Holliday junction DNA helicase RuvA
Namu_3394 Holliday junction DNA helicase RuvB
Namu_3396 crossover junction endodeoxyribonuclease RuvC
Namu_4158 Primosomal protein N' (replication factor Y) - superfamily II helicase-like protein
Namu_1924 DNA repair exonuclease, SbcC
Namu_2384 exonuclease SbcC
Namu_1923 nuclease SbcCD, D subunit
Namu_2385 nuclease SbcCD, D subunit
Namu_0864 DNA repair protein RadA
Namu_0004 DNA replication and repair protein RecF
Namu_0093 putative transcriptional regulator
Namu_1874 ATP-dependent DNA helicase RecG
Namu_1857 DNA repair protein RecO
Namu_0673 recombination protein RecR
Namu_4072 DNA repair protein RecN
Namu_3049 CRISPR-associated protein Cas1
Namu_1783 protein of unknown function DUF853 NPT hydrolase putative
Namu_0127 Ku protein
Namu_0128 DNA polymerase LigD, polymerase domain protein
Namu_0008 DNA gyrase, A subunit
Namu_0007 DNA gyrase, B subunit
Namu_0738 DNA topoisomerase I
Namu_1480 histone family protein DNA-binding protein
Namu_4035 ATP-dependent DNA helicase, RecQ family
Namu_0489 DNA-directed DNA polymerase
Namu_1654 DNA-directed DNA polymerase
Namu_3979 SOS-response transcriptional repressor, LexA
Namu_3156 UMUC domain protein DNA-repair protein
Namu_3155 DNA polymerase III, alpha subunit
Namu_3993 regulatory protein RecX
Namu_2723 helicase c2
Namu_0816 DEAD/H associated domain protein
Namu_1481 NUDIX hydrolase
Namu_4063 NUDIX hydrolase
Namu_3976 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
Namu_2210 phosphoesterase RecJ domain protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K15342 cas1; CRISP-associated protein Cas1
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:nml03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Nakamurella multipartita