09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:nml03030]
03410 Base excision repair [PATH:nml03410]
03420 Nucleotide excision repair [PATH:nml03420]
03430 Mismatch repair [PATH:nml03430]
03440 Homologous recombination [PATH:nml03440]
03450 Non-homologous end-joining [PATH:nml03450]
Namu_0127 Ku protein Namu_0128 DNA polymerase LigD
K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
03460 Fanconi anemia pathway
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:nml03000]
03021 Transcription machinery [BR:nml03021]
03019 Messenger RNA biogenesis [BR:nml03019]
03041 Spliceosome
03011 Ribosome [BR:nml03011]
03009 Ribosome biogenesis [BR:nml03009]
03016 Transfer RNA biogenesis [BR:nml03016]
03012 Translation factors [BR:nml03012]
03110 Chaperones and folding catalysts [BR:nml03110]
04131 Membrane trafficking [BR:nml04131]
04121 Ubiquitin system [BR:nml04121]
03051 Proteasome [BR:nml03051]
03032 DNA replication proteins [BR:nml03032]
03036 Chromosome and associated proteins [BR:nml03036]
03400 DNA repair and recombination proteins [BR:nml03400]
Namu_4436 methylated-DNA/protein-cysteinemethyltransferase Namu_0796 methylated-DNA/protein-cysteinemethyltransferase Namu_4704 Deoxyribodipyrimidine photo-lyase Namu_1489 uracil-DNA glycosylase Namu_4123 DNA-3-methyladenine glycosylase Namu_0860 HhH-GPD family protein Namu_0720 endonuclease III Namu_4586 DNA ligase I Namu_4794 helicase domain protein Namu_4321 NUDIX hydrolase Namu_0149 NUDIX hydrolase Namu_0631 NUDIX hydrolase Namu_3845 NUDIX hydrolase Namu_1264 NUDIX hydrolase Namu_4360 NUDIX hydrolase Namu_0939 Uracil-DNA glycosylase superfamily Namu_5298 Uracil-DNA glycosylase superfamily Namu_0595 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase-like protein Namu_2148 DNA-3-methyladenine glycosylase I Namu_2416 DNA-formamidopyrimidine glycosylase Namu_0210 DNA-(apurinic or apyrimidinic site) lyase Namu_1884 formamidopyrimidine-DNA glycosylase Namu_0817 Formamidopyrimidine-DNA glycosylase catalytic domain protein Namu_3153 exodeoxyribonuclease III Xth Namu_0060 Xylose isomerase domain protein TIM barrel Namu_1450 DNA ligase Namu_5274 DNA-directed DNA polymerase Namu_3037 DNA polymerase I Namu_2992 excinuclease ABC Namu_3030 excinuclease ABC Namu_2796 excinuclease ABC Namu_1585 UvrD/REP helicase Namu_2144 UvrD/REP helicase Namu_0594 UvrD/REP helicase Namu_1258 ATP-dependent DNA helicase PcrA Namu_1063 DNA-directed RNA polymerase Namu_1064 DNA-directed RNA polymerase Namu_1172 DNA-directed RNA polymerase Namu_4161 DNA-directed RNA polymerase Namu_4525 transcription-repair coupling factor Namu_4389 exodeoxyribonuclease VII Namu_4390 exodeoxyribonuclease VII Namu_3172 DNA polymerase III Namu_2748 DNA polymerase III Namu_0002 DNA polymerase III Namu_1551 DNA polymerase III Namu_0743 DNA-directed DNA polymerase Namu_3243 DNA polymerase III Namu_0649 DNA polymerase III Namu_5368 single-strand binding protein Namu_0457 single-strand binding protein Namu_1811 single-strand binding protein Namu_1958 single-strand binding protein Namu_2746 single-strand binding protein Namu_3907 exodeoxyribonuclease V Namu_3908 exodeoxyribonuclease V Namu_2772 Exodeoxyribonuclease V Namu_3906 exodeoxyribonuclease V Namu_3994 recA protein Namu_3395 Holliday junction DNA helicase RuvA Namu_3394 Holliday junction DNA helicase RuvB Namu_3396 crossover junction endodeoxyribonuclease RuvC Namu_4158 Primosomal protein N' (replication factor Y) - superfamily II helicase-like protein Namu_2384 exonuclease SbcC Namu_1924 DNA repair exonuclease Namu_2385 nuclease SbcCD Namu_1923 nuclease SbcCD Namu_0864 DNA repair protein RadA Namu_0004 DNA replication and repair protein RecF Namu_1874 ATP-dependent DNA helicase RecG Namu_0093 putative transcriptional regulator Namu_1857 DNA repair protein RecO Namu_0673 recombination protein RecR Namu_4072 DNA repair protein RecN Namu_3049 CRISPR-associated protein Cas1 Namu_0127 Ku protein Namu_0128 DNA polymerase LigD Namu_0008 DNA gyrase Namu_0007 DNA gyrase Namu_0738 DNA topoisomerase I Namu_1480 histone family protein DNA-binding protein Namu_4035 ATP-dependent DNA helicase Namu_1654 DNA-directed DNA polymerase Namu_0489 DNA-directed DNA polymerase Namu_3979 SOS-response transcriptional repressor Namu_3156 UMUC domain protein DNA-repair protein Namu_3155 DNA polymerase III Namu_3993 regulatory protein RecX Namu_2723 helicase c2 Namu_0816 DEAD/H associated domain protein Namu_1481 NUDIX hydrolase Namu_4063 NUDIX hydrolase Namu_4016 NUDIX hydrolase Namu_3976 ribonucleoside-diphosphate reductase Namu_2210 phosphoesterase RecJ domain protein
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTH; endonuclease III [EC:4.2.99.18] K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:3.6.4.12] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12] K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] K03546 sbcC; DNA repair protein SbcC/Rad50 K03546 sbcC; DNA repair protein SbcC/Rad50 K03547 sbcD; DNA repair protein SbcD/Mre11 K03547 sbcD; DNA repair protein SbcD/Mre11 K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12] K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K15342 cas1; CRISP-associated protein Cas1 K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03530 hupB; DNA-binding protein HU-beta K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K01356 lexA; repressor LexA [EC:3.4.21.88] K14161 imuB; protein ImuB K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] K03565 recX; regulatory protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
03029 Mitochondrial biogenesis [BR:nml03029]
09183 Protein families: signaling and cellular processes
09184 RNA family
09190 Not Included in Pathway or Brite
KEGG Orthology (KO) - Nakamurella multipartita KEGG Orthology (KO) - Nakamurella multipartita