KEGG Orthology (KO) - Pectobacterium atrosepticum 21A

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:pato03030]
     03410 Base excision repair [PATH:pato03410]
       GZ59_01600 mutM; formamidopyrimidine-DNA glycosylase
       GZ59_13870 nei; endonuclease VIII
       GZ59_22790 nth; endonuclease III
       GZ59_08450 putative DNA-3-methyladenine glycosylase
       GZ59_00850 tag; DNA-3-methyladenine glycosylase I
       GZ59_05820 mug; G/U mismatch-specific DNA glycosylase
       GZ59_33060 ung; uracil-DNA glycosylase
       GZ59_10110 mutY; A/G-specific adenine glycosylase
       GZ59_22230 exodeoxyribonuclease III
       GZ59_18340 nfo; endonuclease IV
       GZ59_00260 polA; putative DNA polymerase I
       GZ59_06770 single-stranded-DNA-specific exonuclease RecJ
       GZ59_00470 putative DNA ligase
       GZ59_36080 ligA; DNA ligase
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
     03420 Nucleotide excision repair [PATH:pato03420]
     03430 Mismatch repair [PATH:pato03430]
     03440 Homologous recombination [PATH:pato03440]
     03450 Non-homologous end-joining
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:pato03000]
     03021 Transcription machinery [BR:pato03021]
     03019 Messenger RNA biogenesis [BR:pato03019]
     03041 Spliceosome
     03011 Ribosome [BR:pato03011]
     03009 Ribosome biogenesis [BR:pato03009]
     03016 Transfer RNA biogenesis [BR:pato03016]
     03012 Translation factors [BR:pato03012]
     03110 Chaperones and folding catalysts [BR:pato03110]
     04131 Membrane trafficking [BR:pato04131]
     04121 Ubiquitin system [BR:pato04121]
     03051 Proteasome [BR:pato03051]
     03032 DNA replication proteins [BR:pato03032]
     03036 Chromosome and associated proteins [BR:pato03036]
     03400 DNA repair and recombination proteins [BR:pato03400]
       GZ59_23580 ogt_2; methylated-DNA--protein-cysteine methyltransferase
       GZ59_21040 ogt_1; putative methylated DNA--protein-cysteine methyltransferase
       GZ59_13810 phrB; deoxyribodipyrimidine photolyase
       GZ59_33060 ung; uracil-DNA glycosylase
       GZ59_10110 mutY; A/G-specific adenine glycosylase
       GZ59_22790 nth; endonuclease III
       GZ59_38010 mutT; mutator protein (7,8-dihydro-8-oxoguanine-triphosphatase)
       GZ59_29830 MutT-like protein
       GZ59_01550 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
       GZ59_08460 ada; ADA regulatory protein (methylated-DNA--protein-cysteine methyltransferase)
       GZ59_08470 alkB; alkylated DNA repair protein
       GZ59_05820 mug; G/U mismatch-specific DNA glycosylase
       GZ59_08450 putative DNA-3-methyladenine glycosylase
       GZ59_00850 tag; DNA-3-methyladenine glycosylase I
       GZ59_01600 mutM; formamidopyrimidine-DNA glycosylase
       GZ59_13870 nei; endonuclease VIII
       GZ59_22230 exodeoxyribonuclease III
       GZ59_18340 nfo; endonuclease IV
       GZ59_02610 Deoxyribonuclease V
       GZ59_06770 single-stranded-DNA-specific exonuclease RecJ
       GZ59_00470 putative DNA ligase
       GZ59_36080 ligA; DNA ligase
       GZ59_00260 polA; putative DNA polymerase I
       GZ59_37340 uvrA; excision nuclease subunit A
       GZ59_17380 uvrB; excision nuclease ABC subunit B
       GZ59_16790 uvrC; excinuclease ABC subunit C
       GZ59_42360 uvrD; DNA helicase II
       GZ59_02460 rpoB; DNA-directed RNA polymerase, beta-subunit
       GZ59_02470 rpoC; DNA-directed RNA polymerase beta' subunit
       GZ59_40620 rpoA; DNA-directed RNA polymerase alpha chain
       GZ59_00440 rpoZ; DNA-directed RNA polymerase omega chain
       GZ59_27810 transcription-repair coupling factor
       GZ59_10940 mutS; DNA mismatch repair protein
       GZ59_39350 DNA mismatch repair protein MutL
       GZ59_10190 mutH; DNA mismatch repair protein
       GZ59_20000 sbcB; exodeoxyribonuclease I
       GZ59_32240 exodeoxyribonuclease VII
       GZ59_11610 xseB; exodeoxyribonuclease VII small subunit
       GZ59_10860 dnaE; DNA polymerase III alpha subunit
       GZ59_45400 dnaN; DNA polymerase III, beta chain
       GZ59_04300 holC; DNA polymerase III, chi subunit
       GZ59_13340 holA; DNA polymerase III, delta subunit
       GZ59_27980 holB; DNA polymerase III, delta' subunit
       GZ59_33630 dnaQ; DNA polymerase III, epsilon chain
       GZ59_12060 dnaX; DNA polymerase III subunit tau
       GZ59_06380 holD; DNA polymerase III, psi subunit
       GZ59_20820 holE; DNA polymerase III, theta subunit
       GZ59_09160 single-strand binding protein
       GZ59_37350 ssb; single-strand binding protein
       GZ59_43970 DNA adenine methylase
       GZ59_19320 phage DNA adenine methylase
       GZ59_41450 dam; DNA adenine methylase
       GZ59_10300 recB; exodeoxyribonuclease V beta chain
       GZ59_10280 recC; exodeoxyribonuclease V gamma chain
       GZ59_10310 recD; exodeoxyribonuclease V alpha chain
       GZ59_34060 recA; DNA strand exchange and recombination protein
       GZ59_20640 ruvA; holliday junction DNA helicase
       GZ59_20650 Holliday junction DNA helicase RuvB
       GZ59_20630 crossover junction endodeoxyribonuclease RuvC
       GZ59_43300 priA; primosomal protein N'
       GZ59_36380 priB; primosomal replication protein N
       GZ59_12030 priC; primosomal replication protein N''
       GZ59_11350 sbcC; exonuclease
       GZ59_11360 nuclease SbcCD
       GZ59_04810 radA; repair protein
       GZ59_45390 recF; DNA replication and repair protein
       GZ59_00410 recG; putative ATP-dependent DNA helicase
       GZ59_32920 recO; DNA repair protein
       GZ59_12080 recR; recombination protein
       GZ59_07750 recN; DNA repair protein
       GZ59_11330 rdgC; recombination associated protein
       GZ59_37170 CRISPR-associated protein Cas1
       GZ59_18160 putative helicase
       GZ59_12300 gyrA; DNA gyrase subunit A
       GZ59_45380 gyrB; DNA gyrase subunit B
       GZ59_22760 topA; DNA topoisomerase I
       GZ59_02630 hupA; DNA-binding protein HU-alpha
       GZ59_11800 hupB; DNA-binding protein HU-beta
       GZ59_02860 fis; DNA-binding protein
       GZ59_21410 ihfA; integration host factor (IHF), DNA-binding protein subunit alpha
       GZ59_19710 ihfB; integration host factor beta-subunit
       GZ59_42290 recQ; ATP-dependent DNA helicase
       GZ59_22340 hns2_1; DNA-binding protein Hns
       GZ59_16580 histone family protein nucleoid-structuring protein H-NS
       GZ59_16340 Hns-like DNA-binding protein
       GZ59_34820 dinB; DNA polymerase IV
       GZ59_05470 lexA; LexA repressor
       GZ59_38510 polB; DNA polymerase II
       GZ59_28160 dinI; DNA-damage-inducible protein I
       GZ59_34050 regulatory protein RecX
       GZ59_42790 ATP-dependent DNA helicase Rep
       GZ59_28460 helD; helicase IV
       GZ59_17730 dinG; putative ATP-dependent helicase
       GZ59_21830 putative ATP-dependent helicase
       GZ59_16220 lhr; putative ATP-dependent helicase
       GZ59_33600 ribonucleoside-diphosphate reductase
       GZ59_12280 nrdA; ribonucleotide reductase of class Ia (aerobic) subunit alpha
       GZ59_12270 nrdB; ribonucleoside-diphosphate reductase 1 beta chain
       GZ59_33610 nrdF; ribonucleoside-diphosphate reductase 2 beta chain
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K19789 radD; DNA repair protein RadD
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K12149 dinI; DNA-damage-inducible protein I
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:3.6.4.12]
K03658 helD; DNA helicase IV [EC:3.6.4.12]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:pato03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: May 29, 2020