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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:rbm03030]
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03410 Base excision repair [PATH:rbm03410]
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03420 Nucleotide excision repair [PATH:rbm03420]
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03430 Mismatch repair [PATH:rbm03430]
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03440 Homologous recombination [PATH:rbm03440]
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03450 Non-homologous end-joining [PATH:rbm03450]
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 TEF_06745 Ku protein
TEF_06740 ATP-dependent DNA ligase
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K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:rbm03000]
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03021 Transcription machinery [BR:rbm03021]
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03019 Messenger RNA biogenesis [BR:rbm03019]
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03041 Spliceosome
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03011 Ribosome [BR:rbm03011]
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03009 Ribosome biogenesis [BR:rbm03009]
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03016 Transfer RNA biogenesis [BR:rbm03016]
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03012 Translation factors [BR:rbm03012]
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03110 Chaperones and folding catalysts [BR:rbm03110]
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04131 Membrane trafficking [BR:rbm04131]
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04121 Ubiquitin system [BR:rbm04121]
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03051 Proteasome [BR:rbm03051]
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03032 DNA replication proteins [BR:rbm03032]
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03036 Chromosome and associated proteins [BR:rbm03036]
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03400 DNA repair and recombination proteins [BR:rbm03400]
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TEF_01145 cysteine methyltransferase
TEF_21655 deoxyribodipyrimidine photolyase
TEF_16710 A/G-specific adenine glycosylase
TEF_08020 endonuclease III
TEF_20515 hypothetical protein
TEF_14070 hypothetical protein
TEF_06710 NTP pyrophosphohydrolase
TEF_13790 hypothetical protein
TEF_20250 deoxyuridine 5'-triphosphate nucleotidohydrolase
TEF_06145 hypothetical protein
TEF_00995 uracil-DNA glycosylase
TEF_18075 hypothetical protein
TEF_16970 hypothetical protein
TEF_00915 3-methyladenine DNA glycosylase
TEF_16510 DNA-formamidopyrimidine glycosylase
TEF_03560 exodeoxyribonuclease III
TEF_12995 exodeoxyribonuclease III
TEF_12360 single-stranded-DNA-specific exonuclease RecJ
TEF_06010 DNA ligase (NAD(+)) LigA
TEF_13040 DNA polymerase I
TEF_01125 excinuclease ABC subunit C
TEF_02570 hypothetical protein
TEF_21860 DNA-directed RNA polymerase subunit beta
TEF_21855 DNA-directed RNA polymerase subunit beta'
TEF_21705 DNA-directed RNA polymerase subunit alpha
TEF_01010 DNA-directed RNA polymerase subunit omega
TEF_12015 transcription-repair coupling factor
TEF_02345 DNA mismatch repair protein MutS
TEF_13690 DNA mismatch repair protein MutL
TEF_20640 exodeoxyribonuclease VII large subunit
TEF_07185 exodeoxyribonuclease VII small subunit
TEF_10960 DNA polymerase III subunit alpha
TEF_05250 DNA polymerase III subunit beta
TEF_19065 DNA polymerase III subunit chi
TEF_01185 DNA polymerase III subunit delta
TEF_12195 hypothetical protein
TEF_18860 hypothetical protein
TEF_05345 hypothetical protein
TEF_01025 DNA polymerase III subunit epsilon
TEF_19495 hypothetical protein
TEF_20940 single-stranded DNA-binding protein
TEF_00190 DNA methyltransferase
TEF_09775 recombinase RecA
TEF_01405 Holliday junction DNA helicase RuvA
TEF_01410 Holliday junction DNA helicase RuvB
TEF_01400 crossover junction endodeoxyribonuclease RuvC
TEF_10650 DNA repair protein RadA
TEF_05245 DNA replication/repair protein RecF
TEF_12005 ATP-dependent DNA helicase RecG
TEF_19810 DNA repair protein RecO
TEF_19485 recombination protein RecR
TEF_06005 DNA repair protein RecN
TEF_00815 double-strand break repair helicase AddA
TEF_00810 double-strand break repair protein AddB
TEF_03100 hypothetical protein
TEF_06745 Ku protein
TEF_06740 ATP-dependent DNA ligase
TEF_11655 DNA gyrase subunit A
TEF_05240 DNA gyrase subunit B
TEF_09570 DNA topoisomerase I
TEF_10505 DNA-binding protein HU
TEF_10780 integration host factor subunit alpha
TEF_16325 integration host factor subunit beta
TEF_07220 DNA polymerase IV
TEF_11065 repressor LexA
TEF_19380 hypothetical protein
TEF_19375 hypothetical protein
TEF_19360 error-prone DNA polymerase
TEF_15040 helicase
TEF_08395 DNA ligase-associated DEXH box helicase
TEF_04795 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
TEF_09110 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K19789 radD; DNA repair protein RadD
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:rbm03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Rhizobiales bacterium NRL2