GFIT result for
ccup
|
GFIT result for
ccup
|
| [Motif] [Align] [N-J Tree] [Dendrogram] [Gene Cluster] |
| ccup:BKK81_15305 (744 a.a.) |
-- |
K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |||||
| DBHit(Length) | Over- lap | Ident. (%) | Score | Para- log | Cont. | KO | Orth | Current Annotation | |
|---|---|---|---|---|---|---|---|---|---|
| > cup:BKK80_16255(744) | 744 | 100.0 | 4715 | 4 | -- | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > cuu:BKK79_16695(744) | 744 | 100.0 | 4715 | 7 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > cnan:A2G96_17265(?) | 759 | 91.4 | 4334 | 0 | -- | - | |||
| > cuh:BJN34_14680(850) | 758 | 90.6 | 4315 | 16 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > reu:Reut_A0888(783) | 758 | 90.2 | 4311 | 25 | -> | K03086 | rpoD | RNA polymerase, sigma 70 subunit, RpoD; K03086 RNA polymerase primary sigma factor | |
| > cox:E0W60_22885(847) | 758 | 90.2 | 4301 | 19 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > reh:H16_A2725(827) | 758 | 89.8 | 4299 | 13 | -> | K03086 | rpoD | rpoD1; DNA-directed RNA polymerase sigma subunit (RpoD); K03086 RNA polymerase primary sigma factor | |
| > cuk:KB879_25560(850) | 759 | 90.3 | 4297 | 20 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > rpj:N234_15435(850) | 757 | 89.7 | 4290 | 14 | -> | K03086 | rpoD | RNA polymerase sigma 70; K03086 RNA polymerase primary sigma factor | |
| > cgd:CR3_1956(750) | 752 | 90.7 | 4266 | 11 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > ccax:KZ686_14540(750) | 752 | 90.3 | 4253 | 12 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > cpau:EHF44_09980(856) | 761 | 88.4 | 4212 | 13 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > rme:Rmet_2606(855) | 760 | 88.4 | 4211 | 12 | -> | K03086 | rpoD | rpoD1; RNA polymerase sigma D factor (housekeeping sigma factor); K03086 RNA polymerase primary sigma factor | |
| > cbw:RR42_m3043(827) | 760 | 88.7 | 4175 | 20 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > cti:RALTA_A2226(683) | 684 | 94.3 | 4087 | 4 | -> | K03086 | rpoD | rpoD1; RNA POLYMERASE SIGMA D (SIGMA-70) FACTOR TRANSCRIPTION REGULATOR PROTEIN; K03086 RNA polymerase primary sigma factor | |
| > ccam:M5D45_12045(684) | 684 | 94.2 | 4080 | 3 | -- | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > cnc:CNE_1c26220(684) | 685 | 93.3 | 4059 | 7 | -> | K03086 | rpoD | rpoD2; DNA-directed RNA polymerase sigma subunit RpoD; K03086 RNA polymerase primary sigma factor | |
| > rmn:TK49_14525(827) | 771 | 85.0 | 4033 | 16 | -> | K03086 | rpoD | RNA polymerase sigma 70; K03086 RNA polymerase primary sigma factor | |
| > rsl:RPSI07_1208(876) | 773 | 85.0 | 4028 | 6 | -- | K03086 | rpoD | rpoD; RNA polymerase sigma70 factor; K03086 RNA polymerase primary sigma factor | |
| > rwe:KOL96_18330(830) | 770 | 85.1 | 4014 | 9 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > rpf:Rpic12D_2027(821) | 770 | 85.2 | 4010 | 9 | -> | K03086 | rpoD | RNA polymerase, sigma 70 subunit, RpoD; K03086 RNA polymerase primary sigma factor | |
| > rpi:Rpic_2420(829) | 770 | 85.2 | 4010 | 8 | -> | K03086 | rpoD | RNA polymerase, sigma 70 subunit, RpoD; K03086 RNA polymerase primary sigma factor | |
| > rsm:CMR15_11163(777) | 772 | 83.9 | 3984 | 6 | -- | K03086 | rpoD | rpoD; RNA polymerase sigma70 factor; K03086 RNA polymerase primary sigma factor | |
| > rsg:JK151_08480(838) | 769 | 84.3 | 3983 | 5 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > rsc:RCFBP_11179(873) | 772 | 83.5 | 3976 | 8 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma70 factor; K03086 RNA polymerase primary sigma factor | |
| > rpu:CDC45_11305(828) | 772 | 83.4 | 3968 | 6 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > rse:F504_2174(819) | 772 | 83.4 | 3968 | 9 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > rsn:RSPO_c01215(873) | 772 | 83.5 | 3961 | 13 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma70 factor; K03086 RNA polymerase primary sigma factor | |
| > rsy:RSUY_12400(873) | 772 | 83.5 | 3961 | 13 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > rnc:GO999_05790(828) | 772 | 83.3 | 3956 | 8 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > rso:RSc2215(755) | 749 | 84.9 | 3947 | 8 | -> | K03086 | rpoD | rpoD; probable rna polymerase sigma d (sigma-70) factor transcription regulator protein; K03086 RNA polymerase primary sigma factor | |
| > rin:ACS15_0956(666) | 664 | 91.3 | 3802 | 5 | -- | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > ptx:ABW99_02495(659) | 657 | 85.2 | 3576 | 3 | -- | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pnr:AT302_16095(700) | 698 | 80.8 | 3552 | 5 | -- | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pfib:PI93_012115(789) | 733 | 78.0 | 3547 | 18 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > ppul:RO07_24500(699) | 705 | 80.0 | 3547 | 3 | -- | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > ppk:U875_08055(691) | 694 | 80.8 | 3540 | 3 | -- | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > ppnm:LV28_05550(691) | 694 | 80.8 | 3540 | 3 | -- | K03086 | rpoD | RNA polymerase subunit sigma; K03086 RNA polymerase primary sigma factor | |
| > ppno:DA70_00765(691) | 694 | 80.8 | 3540 | 3 | -- | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > prb:X636_01570(691) | 694 | 80.8 | 3540 | 3 | -- | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pspu:NA29_12205(701) | 706 | 79.5 | 3537 | 3 | -- | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pand:DRB87_14825(700) | 705 | 79.7 | 3535 | 5 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pfg:AB870_02870(700) | 704 | 79.3 | 3535 | 3 | -- | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > papi:SG18_23815(698) | 707 | 79.2 | 3530 | 3 | -- | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pcom:NTU39_17520(701) | 705 | 79.4 | 3521 | 2 | -- | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pve:UC34_15945(676) | 657 | 83.6 | 3520 | 4 | -- | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pox:MB84_20810(662) | 657 | 83.9 | 3513 | 3 | -- | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pmeg:FNZ07_06525(802) | 755 | 74.4 | 3491 | 17 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pter:C2L65_28295(796) | 745 | 74.9 | 3474 | 9 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pacp:FAZ97_21915(802) | 757 | 73.6 | 3472 | 7 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > para:BTO02_20190(799) | 734 | 74.9 | 3468 | 12 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > phs:C2L64_31560(799) | 745 | 74.8 | 3468 | 9 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pew:KZJ38_35870(800) | 735 | 74.8 | 3467 | 13 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > brh:RBRH_01153(778) | 708 | 77.5 | 3466 | 2 | -> | K03086 | rpoD | RNA polymerase sigma factor rpoD; K03086 RNA polymerase primary sigma factor | |
| > tvl:FAZ95_37355(?) | 753 | 73.4 | 3466 | 0 | -- | - | |||
| > pts:CUJ90_24685(799) | 748 | 74.6 | 3463 | 15 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > bgl:bglu_2g15870(805) | 731 | 75.4 | 3462 | 24 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pbry:NDK50_35105(797) | 746 | 73.6 | 3461 | 5 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pgis:I6I06_17615(795) | 747 | 74.3 | 3461 | 8 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > bte:BTH_II0621(800) | 739 | 74.2 | 3460 | 43 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pspw:BJG93_20670(796) | 729 | 74.9 | 3460 | 13 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pgp:CUJ91_31075(807) | 764 | 72.4 | 3459 | 10 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > parb:CJU94_29570(800) | 749 | 74.1 | 3456 | 10 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > ptro:G5S35_22580(802) | 771 | 71.6 | 3455 | 16 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > bmj:BMULJ_03703(804) | 765 | 72.3 | 3454 | 47 | -> | rpoD; RNA polymerase primary sigma factor | |||
| > bmu:Bmul_4813(804) | 765 | 72.3 | 3454 | 50 | -> | K03086 | rpoD | RNA polymerase, sigma 70 subunit, RpoD; K03086 RNA polymerase primary sigma factor | |
| > ppai:E1956_15675(?) | 770 | 71.3 | 3454 | 0 | -- | - | |||
| > bgd:bgla_2g21200(805) | 761 | 72.1 | 3453 | 19 | -> | K03086 | rpoD | RNA polymerase, sigma 70 subunit, RpoD family protein; K03086 RNA polymerase primary sigma factor | |
| > bmv:BMASAVP1_1520(736) | 739 | 74.2 | 3453 | 9 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > bpl:BURPS1106A_A2384(736) | 739 | 74.2 | 3453 | 9 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > bur:Bcep18194_B2204(808) | 748 | 73.5 | 3451 | 31 | -> | K03086 | rpoD | RNA polymerase, sigma 70 subunit, RpoD; K03086 RNA polymerase primary sigma factor | |
| > bch:Bcen2424_3886(805) | 763 | 72.0 | 3448 | 29 | -> | K03086 | rpoD | RNA polymerase, sigma 70 subunit, RpoD; K03086 RNA polymerase primary sigma factor | |
| > bpm:BURPS1710b_A0833(800) | 739 | 73.9 | 3448 | 89 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > bpd:BURPS668_A2525(736) | 739 | 73.7 | 3447 | 11 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > caba:SBC2_56960(873) | 742 | 74.3 | 3446 | 5 | -> | K03086 | rpoD | rpoD_2; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pacs:FAZ98_17775(798) | 769 | 71.7 | 3444 | 13 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > pbon:QS306_09525(?) | 748 | 73.8 | 3443 | 0 | -- | - | |||
| > bvi:Bcep1808_4264(809) | 746 | 72.8 | 3442 | 39 | -> | K03086 | rpoD | RNA polymerase, sigma 70 subunit, RpoD; K03086 RNA polymerase primary sigma factor | |
| > bam:Bamb_3257(805) | 746 | 73.1 | 3441 | 36 | -> | K03086 | rpoD | RNA polymerase, sigma 70 subunit, RpoD; K03086 RNA polymerase primary sigma factor | |
| > bcai:K788_0000369(685) | 679 | 79.7 | 3441 | 4 | -- | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > baen:L3V59_34395(?) | 746 | 73.2 | 3440 | 0 | -- | - | |||
| > bann:JFN94_22185(805) | 763 | 72.2 | 3440 | 30 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > bari:NLX30_33875(805) | 763 | 71.7 | 3439 | 34 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > bgp:BGL_2c21380(805) | 731 | 74.7 | 3439 | 23 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor | |
| > bpla:bpln_2g21580(805) | 731 | 74.7 | 3439 | 28 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > bgu:KS03_4353(682) | 679 | 78.9 | 3438 | 4 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > bph:Bphy_3941(685) | 679 | 79.5 | 3438 | 4 | -> | K03086 | rpoD | RNA polymerase, sigma 70 subunit, RpoD; K03086 RNA polymerase primary sigma factor | |
| > bfn:OI25_5231(680) | 680 | 79.0 | 3436 | 4 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > byi:BYI23_B011060(737) | 719 | 75.0 | 3434 | 7 | -> | K03086 | rpoD | rpoD; RNA polymerase, sigma 70 subunit, RpoD; K03086 RNA polymerase primary sigma factor | |
| > pkf:RW095_16445(?) | 747 | 73.8 | 3434 | 0 | -- | - | |||
| > burk:DM992_30230(805) | 763 | 71.8 | 3433 | 30 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > tcar:U0034_27330(?) | 741 | 73.1 | 3433 | 0 | -- | - | |||
| > cabk:NK8_31280(?) | 678 | 78.3 | 3432 | 0 | -- | - | |||
| > pcj:CUJ87_26830(803) | 748 | 73.5 | 3432 | 11 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > psaa:QEN71_15185(?) | 679 | 79.4 | 3432 | 0 | -- | - | |||
| > bac:BamMC406_3783(805) | 746 | 72.8 | 3431 | 30 | -> | K03086 | rpoD | RNA polymerase, sigma 70 subunit, RpoD; K03086 RNA polymerase primary sigma factor | |
| > bgf:BC1003_4533(803) | 747 | 73.2 | 3431 | 9 | -> | K03086 | rpoD | RNA polymerase, sigma 70 subunit, RpoD; K03086 RNA polymerase primary sigma factor | |
| > bcon:NL30_07765(686) | 682 | 78.2 | 3430 | 6 | -> | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |
| > bue:BRPE67_BCDS14830(685) | 678 | 78.3 | 3430 | 7 | -> | K03086 | rpoD | rpoD; RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor | |
| > pcaf:DSC91_002804(680) | 680 | 79.0 | 3430 | 2 | -- | K03086 | rpoD | RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor | |