KEGG   DISEASE: Xeroderma pigmentosum
Entry
H01428                      Disease                                
Name
Xeroderma pigmentosum
  Supergrp
Disorders of nucleotide excision repair [DS:H00403]
Description
Xeroderma pigmentosum (XP) is a rare autosomal-inherited, skin and neurodegenerative disease in which exposure to sunlight can result in a high incidence of skin and mucous membrane cancer. XP is classified into eight genetic complementation groups by the present. In this inside, 7 groups from the XP-A group to the G group show the abnormality in nucleotide excision repair (NER). The symptoms of XP begin in early life. Severe sunburn and blistering occurs in a half of patients, and all show early extensive freckling. Cancer incidence for individuals with XP under 20 years of age is 2,000 times as high as incidence in the general population. Neurodegeneration can be correlated with mutations in specific XP genes (XPA, ERCC3, ERCC2 and ERCC5).
Category
Congenital malformation
Brite
Human diseases in ICD-11 classification [BR:br08403]
 20 Developmental anomalies
  Multiple developmental anomalies or syndromes
   LD27  Syndromes with skin or mucosal anomalies as a major feature
    H01428  Xeroderma pigmentosum
Pathway-based classification of diseases [BR:br08402]
 Replication and repair
  nt06502  Nucleotide excision repair
   H01428  Xeroderma pigmentosum
  nt06508  Interstrand crosslink repair
   H01428  Xeroderma pigmentosum
Pathway
hsa03420  Nucleotide excision repair
Network
nt06502 Nucleotide excision repair
nt06508 Interstrand crosslink repair
Gene
(XPA) XPA [HSA:7507] [KO:K10847]
(XPB) ERCC3 [HSA:2071] [KO:K10843]
(XPC) XPC [HSA:7508] [KO:K10838]
(XPD) ERCC2 [HSA:2068] [KO:K10844]
(XPE) DDB2 [HSA:1643] [KO:K10140]
(XPF) ERCC4 [HSA:2072] [KO:K10848]
(XPG) ERCC5 [HSA:2073] [KO:K10846]
(XPV) POLH [HSA:5429] [KO:K03509]
Comment
Disorder of DNA repair system
Other DBs
ICD-11: LD27.1
MeSH: D014983
OMIM: 278700 610651 278720 278730 278740 278760 278780 278750
Reference
  Authors
Cleaver JE, Lam ET, Revet I
  Title
Disorders of nucleotide excision repair: the genetic and molecular basis of heterogeneity.
  Journal
Nat Rev Genet 10:756-68 (2009)
DOI:10.1038/nrg2663
Reference
PMID:2234061 (XPA)
  Authors
Tanaka K, Miura N, Satokata I, Miyamoto I, Yoshida MC, Satoh Y, Kondo S, Yasui A, Okayama H, Okada Y
  Title
Analysis of a human DNA excision repair gene involved in group A xeroderma pigmentosum and containing a zinc-finger domain.
  Journal
Nature 348:73-6 (1990)
DOI:10.1038/348073a0
Reference
PMID:2167179 (ERCC3)
  Authors
Weeda G, van Ham RC, Vermeulen W, Bootsma D, van der Eb AJ, Hoeijmakers JH
  Title
A presumed DNA helicase encoded by ERCC-3 is involved in the human repair disorders xeroderma pigmentosum and Cockayne's syndrome.
  Journal
Cell 62:777-91 (1990)
DOI:10.1016/0092-8674(90)90122-u
Reference
PMID:8298653 (XPC)
  Authors
Li L, Bales ES, Peterson CA, Legerski RJ
  Title
Characterization of molecular defects in xeroderma pigmentosum group C.
  Journal
Nat Genet 5:413-7 (1993)
DOI:10.1038/ng1293-413
Reference
PMID:7849702 (ERCC2)
  Authors
Frederick GD, Amirkhan RH, Schultz RA, Friedberg EC
  Title
Structural and mutational analysis of the xeroderma pigmentosum group D (XPD) gene.
  Journal
Hum Mol Genet 3:1783-8 (1994)
DOI:10.1093/hmg/3.10.1783
Reference
PMID:8798680 (DDB2)
  Authors
Nichols AF, Ong P, Linn S
  Title
Mutations specific to the xeroderma pigmentosum group E Ddb- phenotype.
  Journal
J Biol Chem 271:24317-20 (1996)
DOI:10.1074/jbc.271.40.24317
Reference
PMID:8797827 (ERCC4)
  Authors
Sijbers AM, de Laat WL, Ariza RR, Biggerstaff M, Wei YF, Moggs JG, Carter KC, Shell BK, Evans E, de Jong MC, Rademakers S, de Rooij J, Jaspers NG, Hoeijmakers JH, Wood RD
  Title
Xeroderma pigmentosum group F caused by a defect in a structure-specific DNA repair endonuclease.
  Journal
Cell 86:811-22 (1996)
DOI:10.1016/s0092-8674(00)80155-5
Reference
PMID:7951246 (ERCC5)
  Authors
Nouspikel T, Clarkson SG
  Title
Mutations that disable the DNA repair gene XPG in a xeroderma pigmentosum group G patient.
  Journal
Hum Mol Genet 3:963-7 (1994)
DOI:10.1093/hmg/3.6.963
Reference
PMID:10385124 (POLH)
  Authors
Masutani C, Kusumoto R, Yamada A, Dohmae N, Yokoi M, Yuasa M, Araki M, Iwai S, Takio K, Hanaoka F
  Title
The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase eta.
  Journal
Nature 399:700-4 (1999)
DOI:10.1038/21447
LinkDB

» Japanese version

KEGG   DISEASE: Cockayne syndrome
Entry
H00076                      Disease                                
Name
Cockayne syndrome
  Supergrp
Disorders of nucleotide excision repair [DS:H00403]
Description
Cockayne syndrome (CS) is a rare recessive disorder characterized by progressive multisystem abnormalities such as postnatal growth deficiency, progressive pigmentary retinopathy, sensorineural hearing loss, dental caries and neurological degeneration. CS has thus been classified as a segmental premature-aging syndrome. Two complementation groups (CSA and CSB) have been identified so far in CS cases. CSA caused by mutation in the gene encoding the group 8 excision-repair cross-complementing protein (ERCC8) is early childhood onset in the second year of life. CSB caused by mutation in the ERCC6 gene is late childhood onset with mild symptoms. ERCC8 encodes a Walker domain (WD)-repeat protein involved in the transcription-coupled repair system of the actively transcribed DNA. ERCC6 protein is at the interface of transcription and DNA repair and is involved in transcription-coupled and global genome-DNA repair, as well as in general transcription.
Category
Neurodegenerative disease
Brite
Human diseases in ICD-11 classification [BR:br08403]
 20 Developmental anomalies
  Multiple developmental anomalies or syndromes
   LD2B  Syndromes with premature ageing appearance as a major feature
    H00076  Cockayne syndrome
Pathway-based classification of diseases [BR:br08402]
 Replication and repair
  nt06502  Nucleotide excision repair
   H00076  Cockayne syndrome
  nt06508  Interstrand crosslink repair
   H00076  Cockayne syndrome
Pathway
hsa03420  Nucleotide excision repair
Network
nt06502 Nucleotide excision repair
nt06508 Interstrand crosslink repair
Gene
(CSA) ERCC8 [HSA:1161] [KO:K10570]
(CSB) ERCC6 [HSA:2074] [KO:K10841]
(XPB/CS) ERCC3 [HSA:2071] [KO:K10843]
(XPF/CS) ERCC4 [HSA:2072] [KO:K10848]
(XPG/CS) ERCC5 [HSA:2073] [KO:K10846]
Comment
Affected region: cerebral cortex, cerebellum, basal ganglia
Microscopic lesion: accumulate of DNA lesions, tigroid-type demyelination, multifocal calcium deposition
Other DBs
ICD-11: LD2B
MeSH: D003057
OMIM: 216400 133540 610651 278780
Reference
  Authors
Frosina G.
  Title
The current evidence for defective repair of oxidatively damaged DNA in Cockayne syndrome.
  Journal
Free Radic Biol Med 43:165-77 (2007)
DOI:10.1016/j.freeradbiomed.2007.04.001
Reference
PMID:17084038 (ERCC8)
  Authors
Kleppa L, Kanavin OJ, Klungland A, Stromme P
  Title
A novel splice site mutation in the Cockayne syndrome group A gene in two siblings with Cockayne syndrome.
  Journal
Neuroscience 145:1397-406 (2007)
DOI:10.1016/j.neuroscience.2006.09.025
Reference
PMID:14639525 (ERCC6)
  Authors
Licht CL, Stevnsner T, Bohr VA
  Title
Cockayne syndrome group B cellular and biochemical functions.
  Journal
Am J Hum Genet 73:1217-39 (2003)
DOI:10.1086/380399
Reference
PMID:16947863 (ERCC3)
  Authors
Oh KS, Khan SG, Jaspers NG, Raams A, Ueda T, Lehmann A, Friedmann PS, Emmert S, Gratchev A, Lachlan K, Lucassan A, Baker CC, Kraemer KH
  Title
Phenotypic heterogeneity in the XPB DNA helicase gene (ERCC3): xeroderma pigmentosum without and with Cockayne syndrome.
  Journal
Hum Mutat 27:1092-103 (2006)
DOI:10.1002/humu.20392
Reference
PMID:23623389 (ERCC4)
  Authors
Kashiyama K, Nakazawa Y, Pilz DT, Guo C, Shimada M, Sasaki K, Fawcett H, Wing JF, Lewin SO, Carr L, Li TS, Yoshiura K, Utani A, Hirano A, Yamashita S, Greenblatt D, Nardo T, Stefanini M, McGibbon D, Sarkany R, Fassihi H, Takahashi Y, Nagayama Y, Mitsutake N, Lehmann AR, Ogi T
  Title
Malfunction of nuclease ERCC1-XPF results in diverse clinical manifestations and causes Cockayne syndrome, xeroderma pigmentosum, and Fanconi anemia.
  Journal
Am J Hum Genet 92:807-19 (2013)
DOI:10.1016/j.ajhg.2013.04.007
Reference
PMID:8317483 (ERCC5)
  Authors
Vermeulen W, Jaeken J, Jaspers NG, Bootsma D, Hoeijmakers JH
  Title
Xeroderma pigmentosum complementation group G associated with Cockayne syndrome.
  Journal
Am J Hum Genet 53:185-92 (1993)
LinkDB

» Japanese version

KEGG   DISEASE: Fanconi anemia
Entry
H00238                      Disease                                
Name
Fanconi anemia
Description
Fanconi anemia (FA), a recessive syndrome with both autosomal and X-linked inheritance, features diverse clinical symptoms, such as progressive bone marrow failures, chromosomal instability and susceptibility to cancer. To date, 13 FA gene products have been identified, which cooperate in a common DNA damage-activated signaling pathway regulating DNA repair (the FA pathway).
Category
Hematologic disease
Brite
Human diseases in ICD-11 classification [BR:br08403]
 03 Diseases of the blood or blood-forming organs
  Anaemias or other erythrocyte disorders
   3A70  Aplastic anaemia
    H00238  Fanconi anemia
Pathway-based classification of diseases [BR:br08402]
 Replication and repair
  nt06502  Nucleotide excision repair
   H00238  Fanconi anemia
  nt06506  Double-strand break repair
   H00238  Fanconi anemia
  nt06508  Interstrand crosslink repair
   H00238  Fanconi anemia
Pathway
hsa03460  Fanconi anemia pathway
hsa03440  Homologous recombination
hsa03420  Nucleotide excision repair
Network
nt06502 Nucleotide excision repair
nt06506 Double-strand break repair
nt06508 Interstrand crosslink repair
Gene
(FANCA) FANCA [HSA:2175] [KO:K10888]
(FANCB) FANCB [HSA:2187] [KO:K10889]
(FANCC) FANCC [HSA:2176] [KO:K10890]
(FANCD1) BRCA2 [HSA:675] [KO:K08775]
(FANCD2) FANCD2 [HSA:2177] [KO:K10891]
(FANCE) FANCE [HSA:2178] [KO:K10892]
(FANCF) FANCF [HSA:2188] [KO:K10893]
(FANCG) FANCG [HSA:2189] [KO:K10894]
(FANCI) FANCI [HSA:55215] [KO:K10895]
(FANCJ) BRIP1 [HSA:83990] [KO:K15362]
(FANCL) FANCL [HSA:55120] [KO:K10606]
(FANCM) FANCM [HSA:57697] [KO:K10896]
(FANCN) PALB2 [HSA:79728] [KO:K10897]
(FANCO) RAD51C [HSA:5889] [KO:K10870]
(FANCP) SLX4 [HSA:84464] [KO:K10484]
(FANCQ) ERCC4 [HSA:2072] [KO:K10848]
(FANCR) RAD51 [HSA:5888] [KO:K04482]
(FANCS) BRCA1 [HSA:672] [KO:K10605]
(FANCT) UBE2T [HSA:29089] [KO:K13960]
(FANCU) XRCC2 [HSA:7516] [KO:K10879]
(FANCV) MAD2L2 [HSA:10459] [KO:K13728]
(FANCW) RFWD3 [HSA:55159] [KO:K15691]
(FANCX) FAAP100 [HSA:80233] [KO:K10993]
Other DBs
ICD-11: 3A70.0
MeSH: D005199
OMIM: 227650 300514 227645 605724 227646 600901 603467 614082 609053 609054 614083 610832 613390 613951 615272 617244 617883 616435 617247 617243 617784 621258
Reference
  Authors
Cohn MA, D'Andrea AD
  Title
Chromatin recruitment of DNA repair proteins: lessons from the fanconi anemia and double-strand break repair pathways.
  Journal
Mol Cell 32:306-12 (2008)
DOI:10.1016/j.molcel.2008.10.009
Reference
  Authors
Rego MA, Kolling FW 4th, Howlett NG
  Title
The Fanconi anemia protein interaction network: casting a wide net.
  Journal
Mutat Res 668:27-41 (2009)
DOI:10.1016/j.mrfmmm.2008.11.018
Reference
PMID:18047734 (FANCA - FANCN)
  Authors
Jacquemont C, Taniguchi T
  Title
The Fanconi anemia pathway and ubiquitin.
  Journal
BMC Biochem 8 Suppl 1:S10 (2007)
DOI:10.1186/1471-2091-8-S1-S10
Reference
PMID:20400963 (FANCO)
  Authors
Vaz F, Hanenberg H, Schuster B, Barker K, Wiek C, Erven V, Neveling K, Endt D, Kesterton I, Autore F, Fraternali F, Freund M, Hartmann L, Grimwade D, Roberts RG, Schaal H, Mohammed S, Rahman N, Schindler D, Mathew CG
  Title
Mutation of the RAD51C gene in a Fanconi anemia-like disorder.
  Journal
Nat Genet 42:406-9 (2010)
DOI:10.1038/ng.570
Reference
PMID:21240275 (FANCP)
  Authors
Kim Y, Lach FP, Desetty R, Hanenberg H, Auerbach AD, Smogorzewska A
  Title
Mutations of the SLX4 gene in Fanconi anemia.
  Journal
Nat Genet 43:142-6 (2011)
DOI:10.1038/ng.750
Reference
PMID:23623386 (FANCQ)
  Authors
Bogliolo M, Schuster B, Stoepker C, Derkunt B, Su Y, Raams A, Trujillo JP, Minguillon J, Ramirez MJ, Pujol R, Casado JA, Banos R, Rio P, Knies K, Zuniga S, Benitez J, Bueren JA, Jaspers NG, Scharer OD, de Winter JP, Schindler D, Surralles J
  Title
Mutations in ERCC4, encoding the DNA-repair endonuclease XPF, cause Fanconi anemia.
  Journal
Am J Hum Genet 92:800-6 (2013)
DOI:10.1016/j.ajhg.2013.04.002
Reference
PMID:26681308 (FANCR)
  Authors
Ameziane N, May P, Haitjema A, van de Vrugt HJ, van Rossum-Fikkert SE, Ristic D, Williams GJ, Balk J, Rockx D, Li H, Rooimans MA, Oostra AB, Velleuer E, Dietrich R, Bleijerveld OB, Maarten Altelaar AF, Meijers-Heijboer H, Joenje H, Glusman G, Roach J, Hood L, Galas D, Wyman C, Balling R, den Dunnen J, de Winter JP, Kanaar R, Gelinas R, Dorsman JC
  Title
A novel Fanconi anaemia subtype associated with a dominant-negative mutation in RAD51.
  Journal
Nat Commun 6:8829 (2015)
DOI:10.1038/ncomms9829
Reference
PMID:29133208 (FANCS)
  Authors
Freire BL, Homma TK, Funari MFA, Lerario AM, Leal AM, Velloso EDRP, Malaquias AC, Jorge AAL
  Title
Homozygous loss of function BRCA1 variant causing a Fanconi-anemia-like phenotype, a clinical report and review of previous patients.
  Journal
Eur J Med Genet 61:130-133 (2018)
DOI:10.1016/j.ejmg.2017.11.003
Reference
PMID:26046368 (FANCT)
  Authors
Hira A, Yoshida K, Sato K, Okuno Y, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Shimamoto A, Tahara H, Ito E, Kojima S, Kurumizaka H, Ogawa S, Takata M, Yabe H, Yabe M
  Title
Mutations in the gene encoding the E2 conjugating enzyme UBE2T cause Fanconi anemia.
  Journal
Am J Hum Genet 96:1001-7 (2015)
DOI:10.1016/j.ajhg.2015.04.022
Reference
PMID:22232082 (FANCU)
  Authors
Shamseldin HE, Elfaki M, Alkuraya FS
  Title
Exome sequencing reveals a novel Fanconi group defined by XRCC2 mutation.
  Journal
J Med Genet 49:184-6 (2012)
DOI:10.1136/jmedgenet-2011-100585
Reference
PMID:27500492 (FANCV)
  Authors
Bluteau D, Masliah-Planchon J, Clairmont C, Rousseau A, Ceccaldi R, Dubois d'Enghien C, Bluteau O, Cuccuini W, Gachet S, Peffault de Latour R, Leblanc T, Socie G, Baruchel A, Stoppa-Lyonnet D, D'Andrea AD, Soulier J
  Title
Biallelic inactivation of REV7 is associated with Fanconi anemia.
  Journal
J Clin Invest 126:3580-4 (2016)
DOI:10.1172/JCI88010
Reference
PMID:28691929 (FANCW)
  Authors
Knies K, Inano S, Ramirez MJ, Ishiai M, Surralles J, Takata M, Schindler D
  Title
Biallelic mutations in the ubiquitin ligase RFWD3 cause Fanconi anemia.
  Journal
J Clin Invest 127:3013-3027 (2017)
DOI:10.1172/JCI92069
Reference
PMID:40244696 (FANCX)
  Authors
Harrison BA, Mizrahi-Powell E, Pappas J, Thomas K, Vasishta S, Hebbar S, Shukla A, Nayak SS, Truong TK, Woroch A, Kharbutli Y, Gelb BD, Mintz CS, Evrony GD, Smogorzewska A
  Title
Deficiency of the Fanconi anemia core complex protein FAAP100 results in severe Fanconi anemia.
  Journal
J Clin Invest 135:185126 (2025)
DOI:10.1172/JCI185126
LinkDB

» Japanese version

DBGET integrated database retrieval system