KEGG   PATHWAY: care00020
Entry
care00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Collimonas arenae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
care00020  Citrate cycle (TCA cycle)
care00020

Module
care_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:care00020]
care_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:care00020]
care_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:care00020]
care_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:care00020]
care_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:care00020]
Other DBs
GO: 0006099
Organism
Collimonas arenae [GN:care]
Gene
LT85_3106  hypothetical protein [KO:K01647] [EC:2.3.3.1]
LT85_3593  Citrate synthase [KO:K01647] [EC:2.3.3.1]
LT85_2896  Citrate synthase [KO:K01647] [EC:2.3.3.1]
LT85_3288  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
LT85_2906  Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
LT85_1716  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
LT85_1229  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
LT85_2895  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LT85_2894  Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
LT85_4069  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
LT85_2893  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
LT85_4346  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
LT85_4347  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
LT85_2899  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LT85_2898  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
LT85_2901  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
LT85_2900  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
LT85_3866  Fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
LT85_3630  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
LT85_2903  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LT85_4986  Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
LT85_3585  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
LT85_4072  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
LT85_4071  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
care00010  Glycolysis / Gluconeogenesis
care00053  Ascorbate and aldarate metabolism
care00061  Fatty acid biosynthesis
care00071  Fatty acid degradation
care00190  Oxidative phosphorylation
care00220  Arginine biosynthesis
care00250  Alanine, aspartate and glutamate metabolism
care00280  Valine, leucine and isoleucine degradation
care00350  Tyrosine metabolism
care00470  D-Amino acid metabolism
care00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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