KEGG   PATHWAY: cmk00270
Entry
cmk00270                    Pathway                                
Name
Cysteine and methionine metabolism - Callorhinchus milii (elephant shark)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
cmk00270  Cysteine and methionine metabolism
cmk00270

Module
cmk_M00035  Methionine degradation [PATH:cmk00270]
cmk_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:cmk00270]
Other DBs
GO: 0006534 0006555
Organism
Callorhinchus milii (elephant shark) [GN:cmk]
Gene
103189141  cth; cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
103174679  kynurenine--oxoglutarate transaminase 3 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
103171755  kyat1; kynurenine--oxoglutarate transaminase 1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
103188727  cbsa; cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
103177766  bhmt; betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
103177420  zgc:172121; homocysteine S-methyltransferase YbgG [KO:K00547] [EC:2.1.1.10]
103178910  methionine synthase isoform X1 [KO:K00548] [EC:2.1.1.13]
121848584  LOW QUALITY PROTEIN: methionine synthase-like [KO:K00548] [EC:2.1.1.13]
103182390  S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
103188212  mat2b; methionine adenosyltransferase 2 subunit beta [KO:K00789] [EC:2.5.1.6]
103186728  S-adenosylmethionine synthase isoform X1 [KO:K00789] [EC:2.5.1.6]
103187804  S-adenosylmethionine synthase isoform X1 [KO:K00789] [EC:2.5.1.6]
103178957  amd1; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
103179450  S-adenosylmethionine decarboxylase proenzyme-like [KO:K01611] [EC:4.1.1.50]
103181364  srm; spermidine synthase [KO:K00797] [EC:2.5.1.16]
103189993  sms; spermine synthase [KO:K00802] [EC:2.5.1.22]
103182849  S-methyl-5'-thioadenosine phosphorylase isoform X1 [KO:K00772] [EC:2.4.2.28]
103177523  purine nucleoside phosphorylase LACC1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
103191577  methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
103175781  enoph1; enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
103185966  adi1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
103188097  tat; tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
103187634  gnmt; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
103190939  dnmt1; DNA (cytosine-5)-methyltransferase 1 isoform X1 [KO:K00558] [EC:2.1.1.37]
103183140  dnmt3ab; DNA (cytosine-5)-methyltransferase 3A isoform X1 [KO:K17398] [EC:2.1.1.37]
103172120  DNA (cytosine-5)-methyltransferase 3B isoform X1 [KO:K17399] [EC:2.1.1.37]
103176968  ahcyl2b; adenosylhomocysteinase like 2b isoform X6 [KO:K01251] [EC:3.13.2.1]
103189047  ahcy; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
103182459  S-adenosylhomocysteine hydrolase-like protein 1 [KO:K01251] [EC:3.13.2.1]
103181086  bcat1; branched-chain-amino-acid aminotransferase, cytosolic isoform X1 [KO:K00826] [EC:2.6.1.42]
103190155  bcat2; branched-chain-amino-acid aminotransferase, mitochondrial [KO:K00826] [EC:2.6.1.42]
103179004  gclc; glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
103174649  gclm; glutamate--cysteine ligase regulatory subunit [KO:K11205]
103188617  gss; glutathione synthetase isoform X1 [KO:K21456] [EC:6.3.2.3]
103181130  cdo1; cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
103183545  cysteine dioxygenase type 1 isoform X1 [KO:K00456] [EC:1.13.11.20]
103188918  got1; aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
103171659  got2a; aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
103189773  mpst; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
103175008  L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
103181069  ldhb; L-lactate dehydrogenase B chain [KO:K00016] [EC:1.1.1.27]
103174835  uncharacterized protein LOC103174835 [KO:K00016] [EC:1.1.1.27]
103177941  mdh1ab; malate dehydrogenase 1Ab, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
103172058  LOW QUALITY PROTEIN: malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
103186901  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
103184369  sdsl; LOW QUALITY PROTEIN: serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
103179542  phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
103186090  psat1; phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
cmk00010  Glycolysis / Gluconeogenesis
cmk00250  Alanine, aspartate and glutamate metabolism
cmk00260  Glycine, serine and threonine metabolism
cmk00290  Valine, leucine and isoleucine biosynthesis
cmk00430  Taurine and hypotaurine metabolism
cmk00480  Glutathione metabolism
cmk00620  Pyruvate metabolism
cmk00640  Propanoate metabolism
cmk00770  Pantothenate and CoA biosynthesis
cmk00900  Terpenoid backbone biosynthesis
cmk00920  Sulfur metabolism
KO pathway
ko00270   
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