KEGG   PATHWAY: ece00020
Entry
ece00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli O157:H7 EDL933 (EHEC)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ece00020  Citrate cycle (TCA cycle)
ece00020

Module
ece_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ece00020]
ece_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ece00020]
ece_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ece00020]
ece_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ece00020]
ece_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ece00020]
ece_M00982  Methylcitrate cycle [PATH:ece00020]
Other DBs
GO: 0006099
Organism
Escherichia coli O157:H7 EDL933 (EHEC) [GN:ece]
Gene
Z0124  aceE; pyruvate dehydrogenase (decarboxylase component) [KO:K00163] [EC:1.2.4.1]
Z0125  aceF; pyruvate dehydrogenase (dihydrolipoyltransacetylase component) [KO:K00627] [EC:2.3.1.12]
Z0126  lpdA; lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex [KO:K00382] [EC:1.8.1.4]
Z0128  acnB; aconitate hydrase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Z0428  prpC; putative citrate synthase; propionate metabolism [KO:K01659] [EC:2.3.3.5]
Z0873  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
Z0875  sdhC; succinate dehydrogenase, cytochrome b556 [KO:K00241]
Z0876  sdhD; succinate dehydrogenase, hydrophobic subunit [KO:K00242]
Z0877  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Z0878  sdhB; succinate dehydrogenase, iron sulfur protein [KO:K00240] [EC:1.3.5.1]
Z0880  sucA; 2-oxoglutarate dehydrogenase (decarboxylase component) [KO:K00164] [EC:1.2.4.2]
Z0881  sucB; 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component) [KO:K00658] [EC:2.3.1.61]
Z0882  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Z0883  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Z0887  [KO:K01676] [EC:4.2.1.2]
Z1865  icdA; isocitrate dehydrogenase, specific for NADP+ [KO:K00031] [EC:1.1.1.42]
Z2332  ydbK; putative oxidoreductase, Fe-S subunit [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Z2532  acnA; aconitate hydrase 1 [KO:K27802]
Z2614  fumC; fumarase C= fumarate hydratase Class II; isozyme [KO:K01679] [EC:4.2.1.2]
Z2615  fumA; fumarase A = fumarate hydratase Class I; aerobic isozyme [KO:K01676] [EC:4.2.1.2]
Z2703  [KO:K01675]
Z3468  yojH; orf, hypothetical protein [KO:K00116] [EC:1.1.5.4]
Z4274  yggD; putative transcriptional regulator [KO:K01774]
Z4595  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Z4758  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Z5724  fumB; fumarase B= fumarate hydratase Class I; anaerobic isozyme [KO:K01676] [EC:4.2.1.2]
Z5758  frdD; fumarate reductase, anaerobic, membrane anchor polypeptide [KO:K00247]
Z5759  frdC; fumarate reductase, anaerobic, membrane anchor polypeptide [KO:K00246]
Z5760  frdB; fumarate reductase, anaerobic, iron-sulfur protein subunit [KO:K00245] [EC:1.3.5.1]
Z5762  frdA; fumarate reductase, anaerobic, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ece00010  Glycolysis / Gluconeogenesis
ece00053  Ascorbate and aldarate metabolism
ece00061  Fatty acid biosynthesis
ece00071  Fatty acid degradation
ece00190  Oxidative phosphorylation
ece00220  Arginine biosynthesis
ece00250  Alanine, aspartate and glutamate metabolism
ece00280  Valine, leucine and isoleucine degradation
ece00350  Tyrosine metabolism
ece00470  D-Amino acid metabolism
ece00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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