KEGG   PATHWAY: eco00020
Entry
eco00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli K-12 MG1655
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eco00020  Citrate cycle (TCA cycle)
eco00020

Module
eco_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eco00020]
eco_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eco00020]
eco_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eco00020]
eco_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eco00020]
eco_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eco00020]
Other DBs
GO: 0006099
Organism
Escherichia coli K-12 MG1655 [GN:eco]
Gene
b0720  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
b1276  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
b0771  ybhJ; putative hydratase YbhJ [KO:K01681] [EC:4.2.1.3]
b0118  acnB; hypothetical protein [KO:K01682] [EC:4.2.1.3 4.2.1.99]
b1136  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
b0726  sucA; subunit of E1(0) component of 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
b0727  sucB; dihydrolipoyltranssuccinylase [KO:K00658] [EC:2.3.1.61]
b0116  lpd; lipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
b0729  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
b0728  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
b0723  sdhA; succinate:quinone oxidoreductase, FAD binding protein [KO:K00239] [EC:1.3.5.1]
b0724  sdhB; succinate:quinone oxidoreductase, iron-sulfur cluster binding protein [KO:K00240] [EC:1.3.5.1]
b0721  sdhC; succinate:quinone oxidoreductase, membrane protein SdhC [KO:K00241]
b0722  sdhD; succinate:quinone oxidoreductase, membrane protein SdhD [KO:K00242]
b4154  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
b4153  frdB; fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
b4152  frdC; fumarate reductase membrane protein FrdC [KO:K00246]
b4151  frdD; fumarate reductase membrane protein FrdD [KO:K00247]
b4122  fumB; fumarase B [KO:K01676] [EC:4.2.1.2]
b1612  fumA; fumarase A [KO:K01676] [EC:4.2.1.2]
b1611  fumC; fumarase C [KO:K01679] [EC:4.2.1.2]
b1675  fumD; fumarase D [KO:K01675] [EC:4.2.1.2]
b2929  fumE; fumarase E [KO:K01774] [EC:4.2.1.2]
b3236  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
b2210  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
b3403  pck; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
b0114  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
b0115  aceF; pyruvate dehydrogenase, E2 subunit [KO:K00627] [EC:2.3.1.12]
b1378  ydbK; putative pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eco00010  Glycolysis / Gluconeogenesis
eco00053  Ascorbate and aldarate metabolism
eco00061  Fatty acid biosynthesis
eco00071  Fatty acid degradation
eco00190  Oxidative phosphorylation
eco00220  Arginine biosynthesis
eco00250  Alanine, aspartate and glutamate metabolism
eco00280  Valine, leucine and isoleucine degradation
eco00350  Tyrosine metabolism
eco00470  D-Amino acid metabolism
eco00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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