KEGG   PATHWAY: ehb00020
Entry
ehb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Empedobacter haloabium
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ehb00020  Citrate cycle (TCA cycle)
ehb00020

Module
ehb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ehb00020]
ehb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ehb00020]
ehb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ehb00020]
ehb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ehb00020]
ehb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ehb00020]
ehb_M00982  Methylcitrate cycle [PATH:ehb00020]
Other DBs
GO: 0006099
Organism
Empedobacter haloabium [GN:ehb]
Gene
E7V67_001580  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E7V67_001585  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E7V67_005425  [KO:K01676] [EC:4.2.1.2]
E7V67_006080  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
E7V67_007020  [KO:K00031] [EC:1.1.1.42]
E7V67_007030  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
E7V67_007105  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
E7V67_019030  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E7V67_019040  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
E7V67_019045  [KO:K00164] [EC:1.2.4.2]
E7V67_019075  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
E7V67_019085  [KO:K00240] [EC:1.3.5.1]
E7V67_019090  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E7V67_019095  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
E7V67_019100  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
E7V67_019110  [KO:K00024] [EC:1.1.1.37]
E7V67_019125  acnA; aconitate hydratase AcnA [KO:K27802]
E7V67_019165  [KO:K18118] [EC:2.8.3.18]
E7V67_021325  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E7V67_021330  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
E7V67_021335  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
E7V67_025975  [KO:K01596] [EC:4.1.1.32]
E7V67_026175  [KO:K00382] [EC:1.8.1.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ehb00010  Glycolysis / Gluconeogenesis
ehb00053  Ascorbate and aldarate metabolism
ehb00061  Fatty acid biosynthesis
ehb00071  Fatty acid degradation
ehb00190  Oxidative phosphorylation
ehb00220  Arginine biosynthesis
ehb00250  Alanine, aspartate and glutamate metabolism
ehb00280  Valine, leucine and isoleucine degradation
ehb00350  Tyrosine metabolism
ehb00470  D-Amino acid metabolism
ehb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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