KEGG   PATHWAY: elu00020
Entry
elu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli UM146
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
elu00020  Citrate cycle (TCA cycle)
elu00020

Module
elu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:elu00020]
elu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:elu00020]
elu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:elu00020]
elu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:elu00020]
elu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:elu00020]
Other DBs
GO: 0006099
Organism
Escherichia coli UM146 [GN:elu]
Gene
UM146_14020  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
UM146_15620  methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
UM146_10390  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
UM146_23395  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
UM146_11635  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
UM146_13995  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
UM146_20415  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
UM146_13990  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
UM146_20420  dihydrolipoamide succinyltransferase (E2 component) [KO:K00658] [EC:2.3.1.61]
UM146_20425  putative dihydrolipoyl dehydrogenase, E3 component (lpd-like) protein [KO:K00382] [EC:1.8.1.4]
UM146_23385  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
UM146_13980  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
UM146_20435  succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
UM146_13985  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
UM146_20430  succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
UM146_14005  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
UM146_14000  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
UM146_14015  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
UM146_14010  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
UM146_21020  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
UM146_21015  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
UM146_21010  fumarate reductase subunit C [KO:K00246]
UM146_21005  fumarate reductase subunit D [KO:K00247]
UM146_09095  fumarate hydratase (fumarase A), aerobic Class I [KO:K01676] [EC:4.2.1.2]
UM146_20845  anaerobic class I fumarate hydratase (fumarase B) [KO:K01676] [EC:4.2.1.2]
UM146_09100  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
UM146_08780  hypothetical protein [KO:K01675] [EC:4.2.1.2]
UM146_01875  putative DNA-binding transcriptional regulator [KO:K01774] [EC:4.2.1.2]
UM146_00230  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
UM146_05750  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
UM146_17070  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
UM146_23375  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
UM146_23380  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
UM146_10030  putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
elu00010  Glycolysis / Gluconeogenesis
elu00053  Ascorbate and aldarate metabolism
elu00061  Fatty acid biosynthesis
elu00071  Fatty acid degradation
elu00190  Oxidative phosphorylation
elu00220  Arginine biosynthesis
elu00250  Alanine, aspartate and glutamate metabolism
elu00280  Valine, leucine and isoleucine degradation
elu00350  Tyrosine metabolism
elu00470  D-Amino acid metabolism
elu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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