KEGG   PATHWAY: gpd00230
Entry
gpd00230                    Pathway                                
Name
Purine metabolism - Gordonia pseudamarae
Class
Metabolism; Nucleotide metabolism
Pathway map
gpd00230  Purine metabolism
gpd00230

Module
gpd_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:gpd00230]
gpd_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:gpd00230]
gpd_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:gpd00230]
gpd_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:gpd00230]
gpd_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:gpd00230]
Other DBs
GO: 0006163 0042278
Organism
Gordonia pseudamarae [GN:gpd]
Gene
GII33_16250  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
GII33_06210  ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
GII33_04735  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
GII33_01940  purD; phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
GII33_17960  phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
GII33_03585  purT; formate-dependent phosphoribosylglycinamide formyltransferase [KO:K08289] [EC:6.3.1.21]
GII33_04020  purL; phosphoribosylformylglycinamidine synthase subunit PurL [KO:K23269] [EC:6.3.5.3]
GII33_20115  purS; phosphoribosylformylglycinamidine synthase subunit PurS [KO:K23264] [EC:6.3.5.3]
GII33_20110  purQ; phosphoribosylformylglycinamidine synthase subunit PurQ [KO:K23265] [EC:6.3.5.3 3.5.1.2]
GII33_04750  phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
GII33_07645  5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
GII33_07650  purE; 5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
GII33_20150  phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
GII33_20165  adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
GII33_17955  purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
GII33_10485  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
GII33_10880  deoD; purine-nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
GII33_13350  pgeF; peptidoglycan editing factor PgeF [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
GII33_11330  nucleoside hydrolase [KO:K01239] [EC:3.2.2.1]
GII33_03685  hpt; hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
GII33_07025  guaB; IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
GII33_07030  GuaB3 family IMP dehydrogenase-related protein [KO:K00088] [EC:1.1.1.205]
GII33_08900  nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
GII33_08255  rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase [KO:K01519] [EC:3.6.1.66]
GII33_07050  guaA; glutamine-hydrolyzing GMP synthase [KO:K01951] [EC:6.3.5.2]
GII33_22495  glutamine amidotransferase [KO:K01951] [EC:6.3.5.2]
GII33_02335  amidohydrolase family protein [KO:K01487] [EC:3.5.4.3]
GII33_11860  guanylate kinase [KO:K00942] [EC:2.7.4.8]
GII33_15400  nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
GII33_15395  nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
GII33_14215  deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
GII33_10490  RelA/SpoT family protein [KO:K01139] [EC:2.7.6.5 3.1.7.2]
GII33_06350  exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
GII33_18830  hypothetical protein [KO:K01524] [EC:3.6.1.11 3.6.1.40]
GII33_01520  GTP pyrophosphokinase family protein [KO:K07816] [EC:2.7.6.5]
GII33_01430  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
GII33_05050  HAMP domain-containing protein [KO:K01768] [EC:4.6.1.1]
GII33_20475  HAMP domain-containing protein [KO:K01768] [EC:4.6.1.1]
GII33_03575  adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
GII33_15990  adenylosuccinate synthetase [KO:K01939] [EC:6.3.4.4]
GII33_13615  carbohydrate kinase family protein [KO:K00856] [EC:2.7.1.20]
GII33_07240  adenosine deaminase [KO:K01488] [EC:3.5.4.4]
GII33_17060  adenylate kinase [KO:K00939] [EC:2.7.4.3]
GII33_06290  hydrolase [KO:K04765] [EC:3.6.1.9]
GII33_01290  metallophosphoesterase [KO:K03651] [EC:3.1.4.53]
GII33_10390  HIT domain-containing protein [KO:K19710] [EC:2.7.7.53]
GII33_06310  cysC; adenylyl-sulfate kinase [KO:K00955] [EC:2.7.7.4 2.7.1.25]
GII33_14360  sulfate adenylyltransferase [KO:K00956] [EC:2.7.7.4]
GII33_06305  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
GII33_14355  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
GII33_15425  hpxO; FAD-dependent urate hydroxylase HpxO [KO:K16839] [EC:1.14.13.113]
GII33_04415  FAD-dependent oxidoreductase [KO:K22879] [EC:1.14.13.113]
GII33_07550  uraH; hydroxyisourate hydrolase [KO:K07127] [EC:3.5.2.17]
GII33_07555  uraD; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [KO:K16840] [EC:4.1.1.97]
GII33_02310  Asp/Glu/hydantoin racemase [KO:K16841] [EC:5.1.99.3]
GII33_17465  Asp/Glu racemase [KO:K16841] [EC:5.1.99.3]
GII33_09340  puuE; allantoinase PuuE [KO:K16842] [EC:3.5.2.5]
GII33_03650  allantoicase [KO:K01477] [EC:3.5.3.4]
GII33_12285  urease subunit alpha [KO:K01428] [EC:3.5.1.5]
GII33_12290  urease subunit gamma [KO:K14048] [EC:3.5.1.5]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
gpd00030  Pentose phosphate pathway
gpd00220  Arginine biosynthesis
gpd00250  Alanine, aspartate and glutamate metabolism
gpd00260  Glycine, serine and threonine metabolism
gpd00340  Histidine metabolism
gpd00630  Glyoxylate and dicarboxylate metabolism
gpd00730  Thiamine metabolism
gpd00740  Riboflavin metabolism
gpd00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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