KEGG   PATHWAY: llv04710
Entry
llv04710                    Pathway                                
Name
Circadian rhythm - Lutra lutra (Eurasian river otter)
Description
Circadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In mammals, the circadian clock mechanism consists of cell-autonomous transcription-translation feedback loops that drive rhythmic, 24-hour expression patterns of core clock components. The first negative feedback loop is a rhythmic transcription of period genes (PER1, PER2, and PER3) and chryptochrome genes (CRY1 and CRY2). PER and CRY proteins form a heterodimer, which acts on the CLOCK/BMAL1 heterodimer to repress its own transcription. PER and CRY proteins are phosphorylated by casein kinase epsilon (CKIepsilon), which leads to degradation and restarting of the cycle. The second loop is a positive feedback loop driven by the CLOCK/BMAL1 heterodimer, which initiates transcription of target genes containing E-box cis-regulatory enhancer sequences.
Class
Organismal Systems; Environmental adaptation
Pathway map
llv04710  Circadian rhythm
llv04710

Other DBs
GO: 0007623
Organism
Lutra lutra (Eurasian river otter) [GN:llv]
Gene
125078298  [KO:K02296]
125078347  [KO:K02295]
125080113  [KO:K03094]
125080474  [KO:K07200]
125080978  [KO:K03347]
125081063  [KO:K03094]
125081898  [KO:K07199]
125083637  [KO:K09059]
125083828  [KO:K08533]
125083871  [KO:K03094]
125084400  [KO:K10287]
125084574  [KO:K03362]
125086909  [KO:K21944]
125087061  [KO:K08959] [EC:2.7.11.1]
125088173  [KO:K03728]
125088651  [KO:K09056]
125089125  [KO:K03094]
125089985  [KO:K03094]
125092302  [KO:K03094]
125093736  [KO:K02223] [EC:2.3.1.48]
125093902  [KO:K03094]
125094285  [KO:K03094]
125094711  [KO:K10269]
125095039  [KO:K05870]
125095411  [KO:K02633]
125096032  [KO:K07200]
125096749  [KO:K07198] [EC:2.7.11.31]
125097182  [KO:K21945]
125097369  [KO:K07199]
125098332  [KO:K08534]
125098885  [KO:K03094]
125099904  [KO:K03094]
125100268  [KO:K07198] [EC:2.7.11.31]
125100543  [KO:K03362]
125100872  [KO:K10287]
125103677  [KO:K03094]
125104950  [KO:K08532]
125105052  [KO:K08531]
125105513  [KO:K03094]
125106063  [KO:K02295]
125106630  [KO:K08960] [EC:2.7.11.1]
125106665  [KO:K03730]
125106731  [KO:K03868] [EC:2.3.2.32]
125107078  [KO:K07200]
125108755  [KO:K09026]
125109348  [KO:K03729]
Compound
C00076  Calcium cation
C00575  3',5'-Cyclic AMP
Reference
  Authors
Takahashi JS
  Title
Transcriptional architecture of the mammalian circadian clock.
  Journal
Nat Rev Genet 18:164-179 (2017)
DOI:10.1038/nrg.2016.150
Reference
  Authors
Wang S, Li F, Lin Y, Wu B
  Title
Targeting REV-ERBalpha for therapeutic purposes: promises and challenges.
  Journal
Theranostics 10:4168-4182 (2020)
DOI:10.7150/thno.43834
Reference
  Authors
Panda S, Hogenesch JB, Kay SA.
  Title
Circadian rhythms from flies to human.
  Journal
Nature 417:329-35 (2002)
DOI:10.1038/417329a
Reference
  Authors
Honma S, Kawamoto T, Takagi Y, Fujimoto K, Sato F, Noshiro M, Kato Y, Honma K.
  Title
Dec1 and Dec2 are regulators of the mammalian molecular clock.
  Journal
Nature 419:841-4 (2002)
DOI:10.1038/nature01123
Reference
  Authors
Fu L, Lee CC.
  Title
The circadian clock: pacemaker and tumour suppressor.
  Journal
Nat Rev Cancer 3:350-61 (2003)
DOI:10.1038/nrc1072
Reference
  Authors
Schibler U, Sassone-Corsi P.
  Title
A web of circadian pacemakers.
  Journal
Cell 111:919-22 (2002)
DOI:10.1016/S0092-8674(02)01225-4
Reference
  Authors
Takahashi JS, Hong HK, Ko CH, McDearmon EL
  Title
The genetics of mammalian circadian order and disorder: implications for physiology and disease.
  Journal
Nat Rev Genet 9:764-75 (2008)
DOI:10.1038/nrg2430
Related
pathway
llv04010  MAPK signaling pathway
llv04120  Ubiquitin mediated proteolysis
llv04713  Circadian entrainment
KO pathway
ko04710   

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