KEGG   PATHWAY: mbb00020
Entry
mbb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium tuberculosis variant bovis BCG Pasteur 1173P2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mbb00020  Citrate cycle (TCA cycle)
mbb00020

Module
mbb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mbb00020]
mbb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mbb00020]
mbb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mbb00020]
mbb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mbb00020]
mbb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mbb00020]
mbb_M00982  Methylcitrate cycle [PATH:mbb00020]
Other DBs
GO: 0006099
Organism
Mycobacterium tuberculosis variant bovis BCG Pasteur 1173P2 [GN:mbb]
Gene
BCG_0097c  icd2; Probable isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BCG_0248  pckA; Probable phosphoenolpyruvate carboxykinase pckA [KO:K01596] [EC:4.1.1.32]
BCG_0285c  [KO:K00240] [EC:1.3.5.1]
BCG_0286c  [KO:K00239] [EC:1.3.5.1]
BCG_0502  lpd; Dihydrolipoamide dehydrogenase lpd [KO:K00382] [EC:1.8.1.4]
BCG_0941c  citA; Probable citrate synthase II citA [KO:K01647] [EC:2.3.3.1]
BCG_0948  gltA2; probable citrate synthase i gltA2 [KO:K01647] [EC:2.3.3.1]
BCG_1005  sucC; Probable succinyl-CoA synthetase (beta chain) sucC [KO:K01903] [EC:6.2.1.5]
BCG_1006  sucD; Probable succinyl-CoA synthetase (alpha chain) sucD [KO:K01902] [EC:6.2.1.5]
BCG_1158c  fum; Probable fumarase fum (Fumarate hydratase) [KO:K01679] [EC:4.2.1.2]
BCG_1192  gltA1; Probable citrate synthase I gltA1 [KO:K01659] [EC:2.3.3.5]
BCG_1300  mdh; Probable malate dehydrogenase mdh [KO:K00024] [EC:1.1.1.37]
BCG_1308c  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
BCG_1537c  acn; Probable aconitate hydratase acn [KO:K27802]
BCG_1604  frdA; Probable fumarate reductase [flavoprotein subunit] frdA [KO:K00244] [EC:1.3.5.1]
BCG_1605  frdBC; Probable fumarate reductase [iron-sulfur subunit] frdB and [membrane anchor subunit] frdC [KO:K00245 K00246] [EC:1.3.5.1]
BCG_1606  frdD; Probable fumarate reductase [membrane anchor subunit] frdD [KO:K00247]
BCG_2231  dlaT; DlaT, dihydrolipoamide acyltransferase, E2 component of pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
BCG_2258  aceE; Pyruvate dehydrogenase E1 component aceE [KO:K00163] [EC:1.2.4.1]
BCG_2474c  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BCG_2475c  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BCG_2872c  mqo; Probable malate:quinone oxidoreductase mqo [KO:K00116] [EC:1.1.5.4]
BCG_2988c  pca; Probable pyruvate carboxylase pca [KO:K01958] [EC:6.4.1.1]
BCG_3382  sdhC; Probable succinate dehydrogenase (cytochrome B-556 subunit) SDHC [KO:K00241]
BCG_3383  sdhD; Probable succinate dehydrogenase (hydrophobic membrane anchor subunit) sdhD [KO:K00242]
BCG_3384  sdhA; Probable succinate dehydrogenase (flavoprotein subunit) sdhA [KO:K00239] [EC:1.3.5.1]
BCG_3385  sdhB; Probable succinate dehydrogenase (iron-sulphur protein subunit) sdhB [KO:K00240] [EC:1.3.5.1]
BCG_3409c  icd1; Probable isocitrate dehydrogenase [NADP] icd1 [KO:K00031] [EC:1.1.1.42]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mbb00010  Glycolysis / Gluconeogenesis
mbb00053  Ascorbate and aldarate metabolism
mbb00061  Fatty acid biosynthesis
mbb00071  Fatty acid degradation
mbb00190  Oxidative phosphorylation
mbb00220  Arginine biosynthesis
mbb00250  Alanine, aspartate and glutamate metabolism
mbb00280  Valine, leucine and isoleucine degradation
mbb00350  Tyrosine metabolism
mbb00470  D-Amino acid metabolism
mbb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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