KEGG   PATHWAY: mnb04120
Entry
mnb04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Merops nubicus (carmine bee-eater)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mnb04120  Ubiquitin mediated proteolysis
mnb04120

Other DBs
GO: 0016567
Organism
Merops nubicus (carmine bee-eater) [GN:mnb]
Gene
103768070  UBE4B; ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
103768104  [KO:K16061]
103768341  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
103768388  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
103768432  [KO:K03353]
103768498  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
103768568  HERC1; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
103768653  HERC2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
103768777  CUL5; cullin-5 [KO:K10612]
103768814  FBXO4; F-box only protein 4 [KO:K10291]
103768901  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
103769226  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
103769241  CUL2; cullin-2 [KO:K03870]
103769438  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
103769441  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
103769681  FBXW11; F-box/WD repeat-containing protein 11 [KO:K03362]
103769836  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
103769978  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
103770159  PIAS3; E3 SUMO-protein ligase PIAS3 [KO:K16064] [EC:2.3.2.-]
103770356  CUL4B; cullin-4B [KO:K10609]
103770415  [KO:K03351]
103770673  CDC23; cell division cycle protein 23 homolog [KO:K03355]
103770696  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
103770883  NHLRC1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
103771012  [KO:K22517] [EC:2.3.2.27]
103771101  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
103771207  UBE2O; E2/E3 hybrid ubiquitin-protein ligase UBE2O [KO:K10581] [EC:2.3.2.24]
103771580  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
103772227  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
103772578  TRIM37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
103773039  [KO:K08285] [EC:2.3.2.27]
103773073  [KO:K03869]
103773104  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
103773186  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
103773203  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
103773207  ANAPC16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
103773404  CDC20; cell division cycle protein 20 homolog [KO:K03363]
103773467  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
103773491  DDB2; DNA damage-binding protein 2 [KO:K10140]
103773558  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
103773563  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
103773750  VHL; LOW QUALITY PROTEIN: von Hippel-Lindau disease tumor suppressor [KO:K03871]
103773804  [KO:K10614] [EC:2.3.2.26]
103773899  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
103774230  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
103774297  FBXO2; F-box only protein 2 [KO:K10099]
103774438  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
103774674  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
103774704  [KO:K10687] [EC:2.3.2.34]
103775093  [KO:K10574] [EC:2.3.2.23]
103775262  [KO:K16065] [EC:2.3.2.27]
103775724  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
103775846  [KO:K10611]
103775855  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
103775856  PIAS2; E3 SUMO-protein ligase PIAS2 [KO:K16063] [EC:2.3.2.-]
103776348  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
103776591  UBOX5; LOW QUALITY PROTEIN: RING finger protein 37 [KO:K10600]
103776764  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
103776902  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
103776907  CUL1; cullin-1 [KO:K03347]
103776949  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
103777264  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
103777515  [KO:K10447]
103777574  [KO:K06689] [EC:2.3.2.23]
103777788  [KO:K20217] [EC:2.3.2.23]
103777881  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
103777933  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
103777964  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
103778354  [KO:K10580] [EC:2.3.2.23]
103778375  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
103778721  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
103778725  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
103778759  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
103778971  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
103779098  [KO:K20217] [EC:2.3.2.23]
103779131  CUL4A; LOW QUALITY PROTEIN: cullin-4A [KO:K10609]
103779410  UBA3; NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
103779422  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
103779442  BTRC; F-box/WD repeat-containing protein 1A [KO:K03362]
103779703  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
103779834  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
103779873  TCEB1; transcription elongation factor B polypeptide 1 [KO:K03872]
103779965  [KO:K20217] [EC:2.3.2.23]
103780240  SIAH1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
103780459  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
103780543  [KO:K04725] [EC:2.3.2.27]
103780699  MGRN1; E3 ubiquitin-protein ligase MGRN1 [KO:K10604] [EC:2.3.2.27]
103780982  TRIP12; E3 ubiquitin-protein ligase TRIP12 [KO:K10590] [EC:2.3.2.26]
103781022  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
103781078  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
103781139  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
103781171  DET1; LOW QUALITY PROTEIN: DET1 homolog [KO:K10571]
103781304  TCEB2; LOW QUALITY PROTEIN: transcription elongation factor B polypeptide 2 [KO:K03873]
103781380  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
103781464  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
103781789  UBE3A; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
103781884  [KO:K06689] [EC:2.3.2.23]
103782068  BIRC6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
103782260  SOCS1; suppressor of cytokine signaling 1 isoform X1 [KO:K04694]
103782292  CDC27; cell division cycle protein 27 homolog [KO:K03350]
103782366  UBE4A; LOW QUALITY PROTEIN: ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
103782412  DDB1; DNA damage-binding protein 1 [KO:K10610]
103782507  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
mnb03050  Proteasome
KO pathway
ko04120   

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