KEGG   PATHWAY: mnb04141
Entry
mnb04141                    Pathway                                
Name
Protein processing in endoplasmic reticulum - Merops nubicus (carmine bee-eater)
Description
The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mnb04141  Protein processing in endoplasmic reticulum
mnb04141

Other DBs
GO: 0030433 0034976
Organism
Merops nubicus (carmine bee-eater) [GN:mnb]
Gene
103768070  UBE4B; ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
103768317  CRYAB; alpha-crystallin B chain [KO:K09542]
103768332  [KO:K14006]
103768410  EIF2S1; eukaryotic translation initiation factor 2 subunit 1 isoform X1 [KO:K03237]
103768542  [KO:K10100]
103768626  HSP90AB1; LOW QUALITY PROTEIN: heat shock protein HSP 90-beta [KO:K04079]
103768770  UBXN6; UBX domain-containing protein 6 [KO:K14011]
103768785  BAK1; bcl-2 homologous antagonist/killer [KO:K14021]
103768886  DNAJC5; dnaJ homolog subfamily C member 5 [KO:K09525]
103768965  DERL1; derlin-1 [KO:K11519]
103768994  HSP90B1; endoplasmin [KO:K09487]
103769012  EDEM2; ER degradation-enhancing alpha-mannosidase-like protein 2 [KO:K10085]
103769082  CAPN2; LOW QUALITY PROTEIN: calpain-2 catalytic subunit [KO:K03853] [EC:3.4.22.53]
103769198  UFD1L; ubiquitin fusion degradation protein 1 homolog [KO:K14016]
103769441  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
103769510  SEC61A1; protein transport protein Sec61 subunit alpha isoform 1 [KO:K10956]
103769555  SAR1A; GTP-binding protein SAR1a [KO:K07953] [EC:3.6.5.-]
103769770  DNAJA2; dnaJ homolog subfamily A member 2 [KO:K09503]
103769799  [KO:K09541]
103769836  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
103769922  TRAM1; translocating chain-associated membrane protein 1 [KO:K14010]
103770061  PDIA6; protein disulfide-isomerase A6 [KO:K09584] [EC:5.3.4.1]
103770087  NSFL1C; NSFL1 cofactor p47 [KO:K14012]
103770248  AMFR; E3 ubiquitin-protein ligase AMFR [KO:K10636] [EC:2.3.2.36]
103770344  SSR3; translocon-associated protein subunit gamma [KO:K13251]
103770655  MBTPS2; membrane-bound transcription factor site-2 protease [KO:K07765] [EC:3.4.24.85]
103770701  [KO:K23741]
103770759  HSP90AA1; LOW QUALITY PROTEIN: heat shock protein HSP 90-alpha [KO:K04079]
103770841  LMAN1; protein ERGIC-53 [KO:K10080]
103771100  MAN1C1; mannosyl-oligosaccharide 1,2-alpha-mannosidase IC [KO:K01230] [EC:3.2.1.113]
103771275  STT3A; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A [KO:K07151] [EC:2.4.99.18]
103771286  MBTPS1; membrane-bound transcription factor site-1 protease [KO:K08653] [EC:3.4.21.112]
103771557  SEC61B; protein transport protein Sec61 subunit beta [KO:K09481]
103771580  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
103771582  DNAJC10; dnaJ homolog subfamily C member 10 [KO:K09530] [EC:1.8.4.-]
103771800  [KO:K14016]
103771808  MAN1A2; LOW QUALITY PROTEIN: mannosyl-oligosaccharide 1,2-alpha-mannosidase IB [KO:K01230] [EC:3.2.1.113]
103771820  [KO:K19478]
103771970  PDIA4; protein disulfide-isomerase A4 [KO:K09582] [EC:5.3.4.1]
103772004  EDEM1; ER degradation-enhancing alpha-mannosidase-like protein 1 [KO:K10084]
103772180  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
103772271  LMAN2; vesicular integral-membrane protein VIP36 [KO:K10082]
103772401  NFE2L2; nuclear factor erythroid 2-related factor 2 isoform X1 [KO:K05638]
103772423  CANX; calnexin isoform X1 [KO:K08054]
103772482  TRAF2; LOW QUALITY PROTEIN: TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
103772553  BAG1; BAG family molecular chaperone regulator 1 [KO:K09555]
103772963  CKAP4; cytoskeleton-associated protein 4 [KO:K13999]
103773009  RAD23B; UV excision repair protein RAD23 homolog B [KO:K10839]
103773123  STT3B; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [KO:K07151] [EC:2.4.99.18]
103773193  DERL2; derlin-2 [KO:K13989]
103773208  UBQLN4; ubiquilin-4 [KO:K04523]
103773259  NGLY1; peptide-N(4)-(N-acetyl-beta- glucosaminyl)asparagine amidase [KO:K01456] [EC:3.5.1.52]
103773369  BAG2; BAG family molecular chaperone regulator 2 [KO:K09556]
103773583  SEC13; protein SEC13 homolog [KO:K14004]
103773622  ERLEC1; LOW QUALITY PROTEIN: endoplasmic reticulum lectin 1 [KO:K14008]
103773679  SEC31A; protein transport protein Sec31A isoform X1 [KO:K14005]
103773783  HSPA8; heat shock cognate 71 kDa protein [KO:K03283]
103773817  UGGT1; UDP-glucose:glycoprotein glucosyltransferase 1 [KO:K11718] [EC:2.4.1.-]
103773923  ATF6; cyclic AMP-dependent transcription factor ATF-6 alpha [KO:K09054]
103774091  RPN2; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [KO:K12667]
103774116  RRBP1; ribosome-binding protein 1 [KO:K14000]
103774297  FBXO2; F-box only protein 2 [KO:K10099]
103774323  [KO:K09525]
103774411  WFS1; wolframin [KO:K14020]
103774687  CAPN1; calpain-1 catalytic subunit [KO:K01367] [EC:3.4.22.52]
103775121  [KO:K04440] [EC:2.7.11.24]
103775310  UBXN4; UBX domain-containing protein 4 [KO:K24348]
103775443  EDEM3; ER degradation-enhancing alpha-mannosidase-like protein 3 [KO:K10086]
103775724  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
103775926  RPN1; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 [KO:K12666]
103775938  EIF2AK3; eukaryotic translation initiation factor 2-alpha kinase 3 [KO:K08860] [EC:2.7.11.1]
103775962  SEC61A2; LOW QUALITY PROTEIN: protein transport protein Sec61 subunit alpha isoform 2 [KO:K10956]
103776202  ERN1; serine/threonine-protein kinase/endoribonuclease IRE1 [KO:K08852] [EC:2.7.11.1 3.1.26.-]
103776203  ATF4; cyclic AMP-dependent transcription factor ATF-4 [KO:K04374]
103776297  SSR1; translocon-associated protein subunit alpha [KO:K13249]
103776348  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
103776506  ATXN3; ataxin-3 [KO:K11863] [EC:3.4.22.-]
103776720  SEC63; translocation protein SEC63 homolog [KO:K09540]
103776763  VCP; transitional endoplasmic reticulum ATPase [KO:K13525]
103776867  SEL1L; protein sel-1 homolog 1 [KO:K14026]
103776907  CUL1; cullin-1 [KO:K03347]
103777013  DNAJB12; dnaJ homolog subfamily B member 12 [KO:K09518]
103777114  MAP3K5; mitogen-activated protein kinase kinase kinase 5 [KO:K04426] [EC:2.7.11.25]
103777226  UBQLN1; ubiquilin-1 [KO:K04523]
103777574  [KO:K06689] [EC:2.3.2.23]
103777589  [KO:K11718] [EC:2.4.1.-]
103777630  [KO:K26501]
103777916  SEC24A; protein transport protein Sec24A [KO:K14007]
103777967  TXNDC5; LOW QUALITY PROTEIN: thioredoxin domain-containing protein 5 [KO:K13984] [EC:5.3.4.1]
103778095  [KO:K04523]
103778175  NPLOC4; nuclear protein localization protein 4 homolog [KO:K14015]
103778289  SEC24C; protein transport protein Sec24C [KO:K14007]
103778375  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
103778521  PLAA; phospholipase A-2-activating protein [KO:K14018]
103778619  [KO:K13989]
103778626  HSPA5; 78 kDa glucose-regulated protein [KO:K09490] [EC:3.6.4.10]
103779017  DNAJC3; dnaJ homolog subfamily C member 3 [KO:K09523]
103779031  HSPA4L; heat shock 70 kDa protein 4L [KO:K09485]
103779276  DNAJB11; dnaJ homolog subfamily B member 11 [KO:K09517]
103779452  [KO:K14006]
103779478  ERO1L; ERO1-like protein alpha [KO:K10950] [EC:1.8.4.-]
103779642  MAPK9; LOW QUALITY PROTEIN: mitogen-activated protein kinase 9 [KO:K04440] [EC:2.7.11.24]
103779740  UBXN2A; UBX domain-containing protein 2A [KO:K24349]
103779834  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
103779981  HERPUD1; homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein [KO:K14027]
103780167  ERP29; LOW QUALITY PROTEIN: endoplasmic reticulum resident protein 29 [KO:K09586]
103780183  PDIA3; LOW QUALITY PROTEIN: protein disulfide-isomerase A3 [KO:K08056] [EC:5.3.4.1]
103780435  SEC31B; protein transport protein Sec31B [KO:K14005]
103780490  ERO1LB; ERO1-like protein beta [KO:K10976] [EC:1.8.4.-]
103780701  SEC62; translocation protein SEC62 [KO:K12275]
103781097  RNF185; E3 ubiquitin-protein ligase RNF185 isoform X1 [KO:K10666] [EC:2.3.2.27]
103781528  DNAJB2; dnaJ homolog subfamily B member 2 [KO:K09508]
103781533  OS9; protein OS-9 [KO:K10088]
103781884  [KO:K06689] [EC:2.3.2.23]
103782022  MARCH6; E3 ubiquitin-protein ligase MARCH6 [KO:K10661] [EC:2.3.2.27]
103782050  HSPH1; heat shock protein 105 kDa isoform X1 [KO:K09485]
103782077  VIMP; selenoprotein S [KO:K14025]
103782123  SAR1B; GTP-binding protein SAR1b [KO:K07953] [EC:3.6.5.-]
103782131  HYOU1; LOW QUALITY PROTEIN: hypoxia up-regulated protein 1 [KO:K09486]
103782177  SEC24B; protein transport protein Sec24B [KO:K14007]
103782380  P4HB; protein disulfide-isomerase [KO:K09580] [EC:5.3.4.1]
103782574  BCL2; apoptosis regulator Bcl-2 [KO:K02161]
Compound
C00076  Calcium cation
G00009  
G00010  
G00011  
G00012  
G10694  
Reference
  Authors
Naidoo N
  Title
ER and aging-Protein folding and the ER stress response.
  Journal
Ageing Res Rev 8:150-9 (2009)
DOI:10.1016/j.arr.2009.03.001
Reference
  Authors
Malhotra JD, Kaufman RJ
  Title
The endoplasmic reticulum and the unfolded protein response.
  Journal
Semin Cell Dev Biol 18:716-31 (2007)
DOI:10.1016/j.semcdb.2007.09.003
Reference
  Authors
Maattanen P, Gehring K, Bergeron JJ, Thomas DY
  Title
Protein quality control in the ER: the recognition of misfolded proteins.
  Journal
Semin Cell Dev Biol 21:500-11 (2010)
DOI:10.1016/j.semcdb.2010.03.006
Reference
  Authors
Stolz A, Wolf DH
  Title
Endoplasmic reticulum associated protein degradation: a chaperone assisted journey to hell.
  Journal
Biochim Biophys Acta 1803:694-705 (2010)
DOI:10.1016/j.bbamcr.2010.02.005
Reference
  Authors
Dejgaard K, Theberge JF, Heath-Engel H, Chevet E, Tremblay ML, Thomas DY
  Title
Organization of the Sec61 translocon, studied by high resolution native electrophoresis.
  Journal
J Proteome Res 9:1763-71 (2010)
DOI:10.1021/pr900900x
Related
pathway
mnb00510  N-Glycan biosynthesis
mnb03050  Proteasome
mnb03060  Protein export
mnb04210  Apoptosis
KO pathway
ko04141   

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