KEGG   PATHWAY: mphl00020
Entry
mphl00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycolicibacterium phlei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mphl00020  Citrate cycle (TCA cycle)
mphl00020

Module
mphl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mphl00020]
mphl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mphl00020]
mphl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mphl00020]
mphl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mphl00020]
mphl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mphl00020]
Other DBs
GO: 0006099
Organism
Mycolicibacterium phlei [GN:mphl]
Gene
MPHLCCUG_00807  citA; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
MPHLCCUG_00811  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
MPHLCCUG_00550  prpC2; 2-methylcitrate synthase 2 [KO:K01659] [EC:2.3.3.5]
MPHLCCUG_02871  acnA; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MPHLCCUG_01491  icd; Isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
MPHLCCUG_04016  kgd; Multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MPHLCCUG_04550  lpdC; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MPHLCCUG_03612  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MPHLCCUG_03611  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MPHLCCUG_00936  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MPHLCCUG_00935  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MPHLCCUG_04837  sdhA_2; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MPHLCCUG_01509  sdhA_1; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MPHLCCUG_04838  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MPHLCCUG_01508  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MPHLCCUG_01511  Succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00241]
MPHLCCUG_01510  Succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00242]
MPHLCCUG_04240  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MPHLCCUG_04022  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MPHLCCUG_03213  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MPHLCCUG_00549  cfiB_1; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
MPHLCCUG_02084  cfiB_2; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
MPHLCCUG_04899  pckG; Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
MPHLCCUG_05072  aceE_2; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MPHLCCUG_03388  aceE_1; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MPHLCCUG_03346  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mphl00010  Glycolysis / Gluconeogenesis
mphl00053  Ascorbate and aldarate metabolism
mphl00061  Fatty acid biosynthesis
mphl00071  Fatty acid degradation
mphl00190  Oxidative phosphorylation
mphl00220  Arginine biosynthesis
mphl00250  Alanine, aspartate and glutamate metabolism
mphl00280  Valine, leucine and isoleucine degradation
mphl00350  Tyrosine metabolism
mphl00470  D-Amino acid metabolism
mphl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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