KEGG   PATHWAY: mthn00984
Entry
mthn00984                   Pathway                                
Name
Steroid degradation - Mycolicibacterium thermoresistibile
Class
Metabolism; Xenobiotics biodegradation and metabolism
Pathway map
mthn00984  Steroid degradation
mthn00984

Other DBs
GO: 0006707
Organism
Mycolicibacterium thermoresistibile [GN:mthn]
Gene
4412656_00282  choA; choline dehydrogenase-like flavoprotein [KO:K03333] [EC:1.1.3.6]
4412656_00372  kshA_2; rieske (2Fe-2S) protein [KO:K15982] [EC:1.14.15.30]
4412656_00409  [KO:K28224]
4412656_00431  paaJ; acetyl-CoA acetyltransferase [KO:K00632] [EC:2.3.1.16]
4412656_00477  choD_1; GMC oxidoreductase [KO:K03333] [EC:1.1.3.6]
4412656_00714  fadA_2; thiolase [KO:K00632] [EC:2.3.1.16]
4412656_00799  fcbB2_1; enoyl-CoA hydratase/carnithine racemase [KO:K28232]
4412656_00940  kstD_1; 3-ketosteroid-delta-1-dehydrogenase [KO:K05898] [EC:1.3.99.4]
4412656_00942  kstD_2; Fumarate reductase/succinate dehydrogenase flavoprotein domain protein [KO:K05898] [EC:1.3.99.4]
4412656_00943  kshA_4; oxygenase KshA [KO:K15982] [EC:1.14.15.30]
4412656_00946  ifcA_1; succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K16051] [EC:1.3.99.5]
4412656_00959  bphC; glyoxalase/bleomycin resistance protein/dioxygenase [KO:K16049] [EC:1.13.11.25]
4412656_00960  hsaA_1; Pigment production hydroxylase [KO:K16047] [EC:1.14.14.12]
4412656_00961  hmp_2; Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region [KO:K15983] [EC:1.14.15.30]
4412656_01056  choD_2; Cholesterol oxidase ChoD [KO:K03333] [EC:1.1.3.6]
4412656_01266  caiA_2; Short/branched chain specific acyl-CoA dehydrogenase [KO:K22819] [EC:1.3.99.-]
4412656_01269  [KO:K22818] [EC:1.3.99.-]
4412656_01273  [KO:K28224]
4412656_01303  fcbB2_3; enoyl-CoA hydratase/carnithine racemase [KO:K28232]
4412656_01361  hsaA_3; acyl-CoA dehydrogenase [KO:K16047] [EC:1.14.14.12]
4412656_01408  [KO:K28224]
4412656_01433  [KO:K18688] [EC:6.2.1.42]
4412656_01448  [KO:K18688] [EC:6.2.1.42]
4412656_01450  kshA_5; ring-hydroxylating dioxygenase, large terminal subunit [KO:K15982] [EC:1.14.15.30]
4412656_02213  [KO:K18688] [EC:6.2.1.42]
4412656_02324  [KO:K15981] [EC:1.14.15.29]
4412656_02901  kstD_3; 3-ketosteroid-delta-1-dehydrogenase [KO:K05898] [EC:1.3.99.4]
4412656_02988  fadD_12; acyl-CoA synthetase [KO:K18687] [EC:6.2.1.41]
4412656_03040  hmp_3; ferredoxin [KO:K15983] [EC:1.14.15.30]
4412656_03068  fadA6_2; acetyl-CoA acetyltransferase FadA6_2 [KO:K00632] [EC:2.3.1.16]
4412656_03081  echA8_20; enoyl-CoA hydratase/carnithine racemase [KO:K28232]
4412656_03103  kstD_4; succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K05898] [EC:1.3.99.4]
4412656_03259  kshA_6; iron-sulfur cluster-binding protein, Rieske family protein [KO:K15982] [EC:1.14.15.30]
4412656_03457  frc_17; L-carnitine dehydratase/bile acid-inducible protein F [KO:K01796] [EC:5.1.99.4]
4412656_03466  fadA_3; acetyl-CoA acetyltransferase [KO:K00632] [EC:2.3.1.16]
4412656_03537  [KO:K16045] [EC:1.1.1.145 5.3.3.1]
4412656_03575  ksi_2; steroid delta-isomerase [KO:K01822] [EC:5.3.3.1]
4412656_03978  [KO:K15981] [EC:1.14.15.29]
4412656_03992  [KO:K01822] [EC:5.3.3.1]
4412656_04009  fcbB2_5; enoyl-CoA hydratase/carnithine racemase [KO:K28232]
4412656_04024  [KO:K28219]
4412656_04026  fadE26; acyl-CoA dehydrogenase [KO:K22818] [EC:1.3.99.-]
4412656_04027  [KO:K22819] [EC:1.3.99.-]
4412656_04032  [KO:K18688] [EC:6.2.1.42]
4412656_04035  [KO:K16046] [EC:1.14.15.28]
4412656_04042  kshA_8; ring-hydroxylating dioxygenase with Rieske2Fe-2S domain protein [KO:K15982] [EC:1.14.15.30]
4412656_04053  ksdD; 3-ketosteroid-delta-1-dehydrogenase [KO:K05898] [EC:1.3.99.4]
4412656_04054  [KO:K28218]
4412656_04055  ltp; Putative Lipid transfer protein or keto acyl-CoA thiolase ltp22 [KO:K25623]
4412656_04056  [KO:K25622]
4412656_04057  [KO:K25621]
4412656_04058  [KO:K22822] [EC:1.3.99.-]
4412656_04059  caiA_7; acyl-CoA dehydrogenase [KO:K22821] [EC:1.3.99.-]
4412656_04060  cyp125; cytochrome P450 CYP125 [KO:K15981] [EC:1.14.15.29]
4412656_04061  fadA5; acetyl-CoA acetyltransferase [KO:K00632] [EC:2.3.1.16]
4412656_04066  [KO:K28225]
4412656_04068  caiD_11; enoyl-CoA hydratase/carnithine racemase [KO:K28227]
4412656_04069  gctA; coenzyme A transferase, subunit A [KO:K28228]
4412656_04070  gctB; acyl CoA:acetate/3-ketoacid CoA transferase subunit beta [KO:K28229]
4412656_04071  [KO:K28226]
4412656_04080  pcaF_5; acetyl-CoA acetyltransferase [KO:K00632] [EC:2.3.1.16]
4412656_04082  lvr_4; dehydrogenase of uncharacterised specificity, short-chain alcohol dehydrogenase like protein [KO:K28220]
4412656_04083  [KO:K28222]
4412656_04084  fadD_18; acyl-CoA synthetase [KO:K18687] [EC:6.2.1.41]
4412656_04085  caiA_8; acyl-CoA dehydrogenase domain-containing protein [KO:K28230]
4412656_04086  [KO:K28231]
4412656_04087  [KO:K28221]
4412656_04091  hsaB_2; flavin reductase-like, FMN-binding protein [KO:K16048] [EC:1.5.1.-]
4412656_04092  hsaC; lactoylglutathione lyase-like lyase [KO:K16049] [EC:1.13.11.25]
4412656_04093  hsaD_3; alpha/beta hydrolase fold protein [KO:K16050] [EC:3.7.1.17]
4412656_04094  hsaA_5; pigment production hydroxylase [KO:K16047] [EC:1.14.14.12]
4412656_04095  hmp_6; flavodoxin reductase family protein [KO:K15983] [EC:1.14.15.30]
4412656_04100  bbsG_10; acyl-CoA dehydrogenase domain-containing protein [KO:K22820] [EC:1.3.99.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00187  Cholesterol
C00280  Androstenedione
C00479  Propanal
C00535  Testosterone
C00599  Cholest-4-en-3-one
C00674  5alpha-Androstane-3,17-dione
C01227  Dehydroepiandrosterone
C04793  3,4-Dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione
C04844  3-Hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1(10),2-dien-4-oate
C06762  4-Hydroxy-2-oxohexanoic acid
C07635  Epiandrosterone
C11354  2-Hydroxy-cis-hex-2,4-dienoate
C14909  9alpha-Hydroxyandrosta-1,4-diene-3,17-dione
C19944  3-Hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione
C20144  Androsta-1,4-diene-3,17-dione
C20199  3-[(3aS,4S,7aS)-7a-Methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate
C20252  5-Androstene-3,17-dione
C20838  3-[(3aS,4S,7aS)-7a-Methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA
C20839  (25R)-3-Oxocholest-4-en-26-oate
C20840  (25S)-3-Oxocholest-4-en-26-oyl-CoA
C21076  Delta4-Dafachronic acid
C21906  3-Oxochol-4-en-24-oyl-CoA
C23003  3-[(3aS,4S,5R,7aS)-5-Hydroxy-7a-methyl-1-oxooctahydro-1H-inden-4-yl]propanoyl-CoA
C23004  (2E)-3-[(3aS,4S,5R,7aS)-5-Hydroxy-7a-methyl-1-oxooctahydro-1H-inden-4-yl]prop-2-enoyl-CoA
C23005  3-[(3aS,4S,5R,7aS)-5-Hydroxy-7a-methyl-1-oxooctahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA
C23006  3-[(3aS,4S,5R,7aS)-5-Hydroxy-7a-methyl-1-oxooctahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA
C23007  (3aS,4S,5R,7aS)-5-Hydroxy-7a-methyl-1-oxooctahydro-1H-indene-4-carboxyl-CoA
C23009  (7aS)-7a-Methyl-1,5-dioxo-2,3,5,6,7,7a-hexahydro-1H-indene-4-carboxyl-CoA
C23010  3-Oxocholest-4,24-dien-26-oyl-CoA
C23011  (25R)-3-Oxocholest-4-en-26-oyl-CoA
C23012  24-Hydroxy-3-oxocholest-4-en-26-oyl-CoA
C23013  3,24-Dioxocholest-4-en-26-oyl-CoA
C23014  3-Oxochol-4,22-dien-24-oyl-CoA
C23015  (22S)-Hydroxy-3-oxochol-4-en-24-oyl-CoA
C23016  3,22-Dioxochol-4-en-24-oyl-CoA
C23017  3-Oxopregnene-20-carboxyl-CoA
C23018  3-Oxo-4,17-pregnadiene-20-carboxyl-CoA
C23019  17-Hydroxy-3-oxo-4-pregnene-20-carboxyl-CoA
C23020  (3R)-2-(2-carboxyethyl)-3-methyl-6-oxocyclohex-1-ene-1-carboxyl-CoA
C23021  9-Carboxy-6-methyl-3,7-dioxononanoyl-CoA
C23022  7-Carboxy-4-methyl-5-oxoheptanoyl-CoA
C23023  (2E)-7-Carboxy-4-methyl-5-oxohept-2-enoyl-CoA
C23024  7-Carboxy-3-hydroxy-4-methyl-5-oxoheptanoyl-CoA
C23025  7-Carboxy-4-methyl-3,5-dioxoheptanoyl-CoA
C23026  5-Carboxy-2-methyl-3-oxopentanoyl-CoA
Reference
  Authors
Olivera ER, Luengo JM.
  Title
Steroids as Environmental Compounds Recalcitrant to Degradation: Genetic  Mechanisms of Bacterial Biodegradation Pathways.
  Journal
Genes (Basel) 10 (2019)
DOI:10.3390/genes10070512
Reference
  Authors
Horinouchi M, Hayashi T, Kudo T
  Title
Steroid degradation in Comamonas testosteroni.
  Journal
J Steroid Biochem Mol Biol 129:4-14 (2012)
DOI:10.1016/j.jsbmb.2010.10.008
Reference
  Authors
Horinouchi M, Kurita T, Hayashi T, Kudo T
  Title
Steroid degradation genes in Comamonas testosteroni TA441: Isolation of genes encoding a Delta4(5)-isomerase and 3alpha- and 3beta-dehydrogenases and evidence for a 100 kb steroid degradation gene hot spot.
  Journal
J Steroid Biochem Mol Biol 122:253-63 (2010)
DOI:10.1016/j.jsbmb.2010.06.002
Reference
  Authors
Horinouchi M, Hayashi T.
  Title
Identification of the Coenzyme A (CoA) Ester Intermediates and Genes Involved in  the Cleavage and Degradation of the Steroidal C-Ring by Comamonas testosteroni  TA441.
  Journal
Appl Environ Microbiol 87:e0110221 (2021)
DOI:10.1128/AEM.01102-21
Reference
  Authors
Horinouchi M, Hayashi T.
  Title
Comprehensive summary of steroid metabolism in Comamonas testosteroni TA441:  entire degradation process of basic four rings and removal of C12 hydroxyl group.
  Journal
Appl Environ Microbiol 89:e0014323 (2023)
DOI:10.1128/aem.00143-23
Reference
  Authors
Ouellet H, Johnston JB, de Montellano PR
  Title
Cholesterol catabolism as a therapeutic target in Mycobacterium tuberculosis.
  Journal
Trends Microbiol 19:530-9 (2011)
DOI:10.1016/j.tim.2011.07.009
Reference
  Authors
Van der Geize R, Yam K, Heuser T, Wilbrink MH, Hara H, Anderton MC, Sim E, Dijkhuizen L, Davies JE, Mohn WW, Eltis LD
  Title
A gene cluster encoding cholesterol catabolism in a soil actinomycete provides insight into Mycobacterium tuberculosis survival in macrophages.
  Journal
Proc Natl Acad Sci U S A 104:1947-52 (2007)
DOI:10.1073/pnas.0605728104
Reference
  Authors
Thomas ST, VanderVen BC, Sherman DR, Russell DG, Sampson NS
  Title
Pathway profiling in Mycobacterium tuberculosis: elucidation of cholesterol-derived catabolite and enzymes that catalyze its metabolism.
  Journal
J Biol Chem 286:43668-78 (2011)
DOI:10.1074/jbc.M111.313643
Reference
  Authors
Crowe AM, Casabon I, Brown KL, Liu J, Lian J, Rogalski JC, Hurst TE, Snieckus V, Foster LJ, Eltis LD.
  Title
Catabolism of the Last Two Steroid Rings in Mycobacterium tuberculosis and Other  Bacteria.
  Journal
mBio 8 (2017)
DOI:10.1128/mBio.00321-17
Reference
  Authors
Yuan T, Werman JM, Yin X, Yang M, Garcia-Diaz M, Sampson NS.
  Title
Enzymatic beta-Oxidation of the Cholesterol Side Chain in Mycobacterium tuberculosis  Bifurcates Stereospecifically at Hydration of 3-Oxo-cholest-4,22-dien-24-oyl-CoA.
  Journal
ACS Infect Dis 7:1739-1751 (2021)
DOI:10.1021/acsinfecdis.1c00069
Related
pathway
mthn00010  Glycolysis / Gluconeogenesis
mthn00020  Citrate cycle (TCA cycle)
mthn00100  Steroid biosynthesis
mthn00640  Propanoate metabolism
KO pathway
ko00984   

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