KEGG   PATHWAY: agrg03018
Entry
agrg03018                   Pathway                                
Name
RNA degradation - Anthonomus grandis grandis (boll weevil)
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
agrg03018  RNA degradation
agrg03018

Other DBs
GO: 0006401
Organism
Anthonomus grandis grandis (boll weevil) [GN:agrg]
Gene
126747304  m7GpppX diphosphatase [KO:K12584] [EC:3.6.1.59]
126747977  exosome complex component CSL4 [KO:K07573]
126734354  exosome complex component RRP4 [KO:K03679]
126746791  exosome complex component RRP40 [KO:K03681]
126738336  exosome complex component RRP43-like [KO:K12586]
126740370  exosome complex component MTR3 [KO:K12587]
126747259  exosome complex component RRP42 isoform X1 [KO:K12589]
126746814  exosome complex component RRP41 [KO:K11600]
126735161  exosome complex component RRP46 [KO:K12590]
126741247  exosome complex component RRP45 [KO:K03678]
126734384  exosome complex exonuclease RRP44 [KO:K12585] [EC:3.1.13.-]
126745865  exosome component 10-like isoform X1 [KO:K12591] [EC:3.1.13.-]
126749439  exosome component 10-like [KO:K12591] [EC:3.1.13.-]
126745209  nuclear nucleic acid-binding protein C1D [KO:K12592]
126745163  M-phase phosphoprotein 6 [KO:K12593]
126735980  terminal nucleotidyltransferase 4B-like isoform X1 [KO:K03514] [EC:2.7.7.19]
126741884  exosome RNA helicase MTR4 [KO:K12598] [EC:5.6.2.6]
126736107  helicase SKI2W [KO:K12599] [EC:5.6.2.6]
126734031  tetratricopeptide repeat protein 37 isoform X1 [KO:K12600]
126750608  WD repeat-containing protein 61 [KO:K12602]
126739006  CCR4-NOT transcription complex subunit 6 isoform X1 [KO:K12603] [EC:3.1.13.4]
126747431  CCR4-NOT transcription complex subunit 1 [KO:K12604]
126736186  CCR4-NOT transcription complex subunit 2 isoform X1 [KO:K12605]
126739556  CCR4-NOT transcription complex subunit 3 isoform X1 [KO:K12580]
126737890  CCR4-NOT transcription complex subunit 7 [KO:K12581]
126745248  CCR4-NOT transcription complex subunit 9 isoform X1 [KO:K12606]
126735318  CCR4-NOT transcription complex subunit 10 isoform X1 [KO:K12607]
126740469  ATP-dependent DNA/RNA helicase DHX36-like [KO:K14442] [EC:5.6.2.6]
126735624  poly(A)-specific ribonuclease PARN-like [KO:K01148] [EC:3.1.13.4]
126742288  pre-piRNA 3'-exonuclease trimmer-like isoform X1 [KO:K01148] [EC:3.1.13.4]
126748098  protein Tob1-like [KO:K14443]
126739912  protein BTG4-like [KO:K14443]
126749037  polyadenylate-binding protein 4-like [KO:K13126]
126733892  polyadenylate-binding protein 4-like isoform X1 [KO:K13126]
126737524  PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 [KO:K12571] [EC:3.1.13.4]
126747644  PAN2-PAN3 deadenylation complex subunit pan3 isoform X1 [KO:K12572]
126737239  mRNA-decapping enzyme 1A isoform X1 [KO:K12611] [EC:3.-.-.-]
126735540  m7GpppN-mRNA hydrolase [KO:K12613] [EC:3.6.1.62]
126738622  ATP-dependent RNA helicase me31b [KO:K12614] [EC:5.6.2.7]
126743208  enhancer of mRNA-decapping protein 3 isoform X1 [KO:K12615]
126735069  enhancer of mRNA-decapping protein 4 isoform X1 [KO:K12616]
126740218  5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
126742719  5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
126735993  U6 snRNA-associated Sm-like protein LSm1 [KO:K12620]
126737227  U6 snRNA-associated Sm-like protein LSm2 isoform X1 [KO:K12621]
126737494  U6 snRNA-associated Sm-like protein LSm3 [KO:K12622]
126743766  U6 snRNA-associated Sm-like protein LSm4 [KO:K12623]
126735021  U6 snRNA-associated Sm-like protein LSm5 [KO:K12624]
126736480  U6 snRNA-associated Sm-like protein LSm6 [KO:K12625]
126737425  U6 snRNA-associated Sm-like protein LSm7 [KO:K12626]
126749161  U6 snRNA-associated Sm-like protein LSm8 [KO:K12627]
126741150  enolase-like [KO:K01689] [EC:4.2.1.11]
126733710  enolase-like [KO:K01689] [EC:4.2.1.11]
126739365  polyribonucleotide nucleotidyltransferase 1, mitochondrial [KO:K00962] [EC:2.7.7.8]
126734422  ATP-dependent 6-phosphofructokinase isoform X1 [KO:K00850] [EC:2.7.1.11]
126740994  heat shock 70 kDa protein cognate 5 [KO:K04043]
126745812  heat shock protein 60A [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
agrg03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

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