KEGG   PATHWAY: ava00020
Entry
ava00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Trichormus variabilis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ava00020  Citrate cycle (TCA cycle)
ava00020

Module
ava_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ava00020]
ava_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ava00020]
Other DBs
GO: 0006099
Organism
Trichormus variabilis [GN:ava]
Gene
Ava_2713  citrate synthase [KO:K01659] [EC:2.3.3.5]
Ava_0569  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Ava_4831  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Ava_1927  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Ava_1784  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Ava_1783  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Ava_0936  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Ava_0523  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Ava_3648  succinate dehydrogenase subunit C [KO:K00241]
Ava_3556  fumarase [KO:K01679] [EC:4.2.1.2]
Ava_1273  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Ava_4276  Dehydrogenase, E1 component [KO:K00161] [EC:1.2.4.1]
Ava_1491  Transketolase [KO:K00162] [EC:1.2.4.1]
Ava_3176  Biotin/lipoyl attachment [KO:K00627] [EC:2.3.1.12]
Ava_1080  ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Ava_3046  ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ava00010  Glycolysis / Gluconeogenesis
ava00053  Ascorbate and aldarate metabolism
ava00061  Fatty acid biosynthesis
ava00071  Fatty acid degradation
ava00190  Oxidative phosphorylation
ava00220  Arginine biosynthesis
ava00250  Alanine, aspartate and glutamate metabolism
ava00280  Valine, leucine and isoleucine degradation
ava00350  Tyrosine metabolism
ava00470  D-Amino acid metabolism
ava00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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