KEGG   PATHWAY: avf00630
Entry
avf00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Agrobacterium vitis VAR03-1
Class
Metabolism; Carbohydrate metabolism
Pathway map
avf00630  Glyoxylate and dicarboxylate metabolism
avf00630

Module
avf_M00012  Glyoxylate cycle [PATH:avf00630]
avf_M00621  Glycine cleavage system [PATH:avf00630]
avf_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:avf00630]
Other DBs
GO: 0046487 0043648
Organism
Agrobacterium vitis VAR03-1 [GN:avf]
Gene
RvVAR031_09690  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
RvVAR031_00480  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
RvVAR031_03640  acsA; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
RvVAR031_04250  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
RvVAR031_01560  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RvVAR031_21820  cisY; citrate synthase [KO:K01647] [EC:2.3.3.1]
RvVAR031_pl02480  hypothetical protein [KO:K01647] [EC:2.3.3.1]
RvVAR031_pl02490  citrate synthase [KO:K01647] [EC:2.3.3.1]
RvVAR031_02020  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RvVAR031_03330  phbA; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RvVAR031_08450  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RvVAR031_pl02940  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RvVAR031_03340  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
RvVAR031_16340  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
RvVAR031_43150  pccA; acetyl/propionyl-CoA carboxylase subuit alpha [KO:K01965] [EC:6.4.1.3]
RvVAR031_43120  propionyl-CoA carboxylase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
RvVAR031_34070  acetyl/propionyl-CoA carboxylase subuit alpha [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
RvVAR031_43180  mutA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
RvVAR031_33620  glcD; FAD-binding protein [KO:K00104] [EC:1.1.99.14]
RvVAR031_33630  glcE; 2-hydroxy-acid oxidase [KO:K11472] [EC:1.1.99.14]
RvVAR031_33640  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
RvVAR031_40270  catE; catalase [KO:K03781] [EC:1.11.1.6]
RvVAR031_06250  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
RvVAR031_05750  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RvVAR031_34170  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RvVAR031_10080  phosphatase [KO:K01091] [EC:3.1.3.18]
RvVAR031_18560  phosphoglycolate phosphatase, bacterial [KO:K01091] [EC:3.1.3.18]
RvVAR031_20940  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
RvVAR031_09590  glnA_1; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RvVAR031_13850  glnA_2; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RvVAR031_20610  glnA3; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RvVAR031_26930  glnA_3; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RvVAR031_33370  type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
RvVAR031_15370  glyA1; serine hydroxymethyltransferase 1 [KO:K00600] [EC:2.1.2.1]
RvVAR031_27090  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RvVAR031_21020  gcvP; glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
RvVAR031_21000  gcvT_2; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
RvVAR031_01480  lpdA1_1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RvVAR031_18820  lpdA1_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RvVAR031_21010  gcvH; glycine cleavage system H protein [KO:K02437]
RvVAR031_33070  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RvVAR031_37550  garR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RvVAR031_07590  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
RvVAR031_pl06570  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
RvVAR031_pl06520  ttuC_1; tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RvVAR031_pl06580  ttuC_2; tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RvVAR031_30910  ketohydroxyglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RvVAR031_01290  hypothetical protein [KO:K00126] [EC:1.17.1.9]
RvVAR031_01310  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
RvVAR031_01320  nuoF_1; formate dehydrogenase subunit beta [KO:K00124]
RvVAR031_01330  nuoE; formate dehydrogenase subunit gamma [KO:K00127]
RvVAR031_32210  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RvVAR031_42900  amiF; formamidase [KO:K01455] [EC:3.5.1.49]
RvVAR031_32660  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
avf00010  Glycolysis / Gluconeogenesis
avf00020  Citrate cycle (TCA cycle)
avf00030  Pentose phosphate pathway
avf00053  Ascorbate and aldarate metabolism
avf00071  Fatty acid degradation
avf00230  Purine metabolism
avf00250  Alanine, aspartate and glutamate metabolism
avf00260  Glycine, serine and threonine metabolism
avf00620  Pyruvate metabolism
avf00750  Vitamin B6 metabolism
avf00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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