KEGG   PATHWAY: bbat00020
Entry
bbat00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bdellovibrio bacteriovorus Tiberius
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bbat00020  Citrate cycle (TCA cycle)
bbat00020

Module
bbat_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bbat00020]
bbat_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bbat00020]
bbat_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bbat00020]
bbat_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bbat00020]
Other DBs
GO: 0006099
Organism
Bdellovibrio bacteriovorus Tiberius [GN:bbat]
Gene
Bdt_0540  citZ; hypothetical protein [KO:K01647] [EC:2.3.3.1]
Bdt_2449  cit; citrate synthase [KO:K01659] [EC:2.3.3.5]
Bdt_3105  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Bdt_2706  leuC; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Bdt_3608  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Bdt_1246  leuB; 3-isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
Bdt_2647  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Bdt_2648  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Bdt_2649  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bdt_0740  pdhD; dihydrolipoamide dehydrogenase, E3 subunit [KO:K00382] [EC:1.8.1.4]
Bdt_3689  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
Bdt_3688  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
Bdt_1329  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
Bdt_0023  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Bdt_0024  sdhB; succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Bdt_0022  sdhC; putative cytochrome B subunit [KO:K00241]
Bdt_2116  fumB; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
Bdt_1294  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Bdt_0879  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Bdt_0386  ace; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Bdt_0741  pdhC; pyruvate dehydrogenase E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bbat00010  Glycolysis / Gluconeogenesis
bbat00053  Ascorbate and aldarate metabolism
bbat00061  Fatty acid biosynthesis
bbat00071  Fatty acid degradation
bbat00190  Oxidative phosphorylation
bbat00220  Arginine biosynthesis
bbat00250  Alanine, aspartate and glutamate metabolism
bbat00280  Valine, leucine and isoleucine degradation
bbat00350  Tyrosine metabolism
bbat00470  D-Amino acid metabolism
bbat00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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