KEGG   PATHWAY: bna00240
Entry
bna00240                    Pathway                                
Name
Pyrimidine metabolism - Brassica napus (rape)
Class
Metabolism; Nucleotide metabolism
Pathway map
bna00240  Pyrimidine metabolism
bna00240

Module
bna_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:bna00240]
bna_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:bna00240]
bna_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:bna00240]
bna_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:bna00240]
Other DBs
GO: 0006220 0006213
Organism
Brassica napus (rape) [GN:bna]
Gene
106367373  carbamoyl-phosphate synthase large chain, chloroplastic [KO:K01955] [EC:6.3.5.5]
111212328  carbamoyl-phosphate synthase large chain, chloroplastic-like [KO:K01955] [EC:6.3.5.5]
106354079  carbamoyl-phosphate synthase small chain, chloroplastic-like isoform X1 [KO:K01956] [EC:6.3.5.5]
106435229  carbamoyl-phosphate synthase small chain, chloroplastic [KO:K01956] [EC:6.3.5.5]
106394047  carbamoyl-phosphate synthase small chain, chloroplastic [KO:K01956] [EC:6.3.5.5]
106406783  carbamoyl-phosphate synthase small chain, chloroplastic isoform X1 [KO:K01956] [EC:6.3.5.5]
106357502  aspartate carbamoyltransferase, chloroplastic-like [KO:K00609] [EC:2.1.3.2]
106432342  aspartate carbamoyltransferase, chloroplastic [KO:K00609] [EC:2.1.3.2]
111203208  aspartate carbamoyltransferase, chloroplastic-like [KO:K00609] [EC:2.1.3.2]
106440468  dihydroorotase, mitochondrial-like [KO:K01465] [EC:3.5.2.3]
111214286  dihydroorotase, mitochondrial isoform X1 [KO:K01465] [EC:3.5.2.3]
106360527  dihydroorotate dehydrogenase (quinone), mitochondrial-like [KO:K00254] [EC:1.3.5.2]
106366051  dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
106439886  dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
106348342  dihydroorotate dehydrogenase (quinone), mitochondrial-like [KO:K00254] [EC:1.3.5.2]
106352864  uridine 5'-monophosphate synthase-like isoform X1 [KO:K13421] [EC:2.4.2.10 4.1.1.23]
106406975  uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
106431382  uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
106445466  uridine 5'-monophosphate synthase-like [KO:K13421] [EC:2.4.2.10 4.1.1.23]
106348590  UMP-CMP kinase 3 isoform X1 [KO:K13800] [EC:2.7.4.14]
106348727  UMP-CMP kinase 3 isoform X1 [KO:K13800] [EC:2.7.4.14]
106365882  UMP-CMP kinase 3 isoform X1 [KO:K13800] [EC:2.7.4.14]
106365068  probable UMP-CMP kinase 1 isoform X1 [KO:K13800] [EC:2.7.4.14]
106443152  probable UMP-CMP kinase 2 [KO:K13800] [EC:2.7.4.14]
106440355  UMP-CMP kinase 3 [KO:K13800] [EC:2.7.4.14]
106382537  UMP-CMP kinase 3 [KO:K13800] [EC:2.7.4.14]
106382665  UMP-CMP kinase 3 isoform X1 [KO:K13800] [EC:2.7.4.14]
106414614  probable UMP-CMP kinase 1 isoform X1 [KO:K13800] [EC:2.7.4.14]
125574913  UMP-CMP kinase 3-like isoform X1 [KO:K13800] [EC:2.7.4.14]
125580141  probable UMP-CMP kinase 2 [KO:K13800] [EC:2.7.4.14]
106439547  uridylate kinase-like [KO:K09903] [EC:2.7.4.22]
106446826  uridylate kinase [KO:K09903] [EC:2.7.4.22]
106389225  uridylate kinase [KO:K09903] [EC:2.7.4.22]
106415845  uridylate kinase [KO:K09903] [EC:2.7.4.22]
106348847  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
106366193  nucleoside diphosphate kinase II, chloroplastic [KO:K00940] [EC:2.7.4.6]
106354085  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
106366685  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
106431260  nucleoside diphosphate kinase II, chloroplastic-like [KO:K00940] [EC:2.7.4.6]
106396973  nucleoside diphosphate kinase III, chloroplastic/mitochondrial [KO:K00940] [EC:2.7.4.6]
106401894  nucleoside diphosphate kinase III, chloroplastic/mitochondrial [KO:K00940] [EC:2.7.4.6]
106415748  nucleoside diphosphate kinase IV, chloroplastic/mitochondrial [KO:K00940] [EC:2.7.4.6]
106415051  nucleoside diphosphate kinase II, chloroplastic-like [KO:K00940] [EC:2.7.4.6]
106418549  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
106422272  nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [KO:K00940] [EC:2.7.4.6]
106409161  nucleoside diphosphate kinase II, chloroplastic [KO:K00940] [EC:2.7.4.6]
111212891  nucleoside diphosphate kinase IV, chloroplastic/mitochondrial isoform X1 [KO:K00940] [EC:2.7.4.6]
106346487  probable apyrase 5 [KO:K01510] [EC:3.6.1.5]
106346488  probable apyrase 4 [KO:K01510] [EC:3.6.1.5]
106369327  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
106430981  probable apyrase 5 isoform X1 [KO:K01510] [EC:3.6.1.5]
106430984  probable apyrase 4 [KO:K01510] [EC:3.6.1.5]
106411097  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
106377868  probable apyrase 5 [KO:K01510] [EC:3.6.1.5]
125580738  apyrase 1-like [KO:K14641] [EC:3.6.1.5]
125609160  apyrase 1-like [KO:K14641] [EC:3.6.1.5]
106383468  apyrase 2-like [KO:K14641] [EC:3.6.1.5]
106387780  apyrase 2 [KO:K14641] [EC:3.6.1.5]
106391350  apyrase 2 [KO:K14641] [EC:3.6.1.5]
106435316  apyrase 1 [KO:K14641] [EC:3.6.1.5]
106441526  apyrase 2-like [KO:K14641] [EC:3.6.1.5]
106445292  apyrase 1 [KO:K14641] [EC:3.6.1.5]
106387483  ectonucleotide pyrophosphatase/phosphodiesterase family member 1-like [KO:K01513] [EC:3.1.4.1 3.6.1.9]
106401072  ectonucleotide pyrophosphatase/phosphodiesterase family member 3-like isoform X1 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
106367362  nudix hydrolase 25 isoform X1 [KO:K26955] [EC:3.6.1.17]
106370538  nudix hydrolase 25-like isoform X2 [KO:K26955] [EC:3.6.1.17]
106356271  nudix hydrolase 25 [KO:K26955] [EC:3.6.1.17]
111214017  nudix hydrolase 25-like [KO:K26955] [EC:3.6.1.17]
106360762  CTP synthase isoform X2 [KO:K01937] [EC:6.3.4.2]
106351473  CTP synthase [KO:K01937] [EC:6.3.4.2]
106412810  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
106452376  CTP synthase [KO:K01937] [EC:6.3.4.2]
106441209  CTP synthase 1 isoform X3 [KO:K01937] [EC:6.3.4.2]
106440412  CTP synthase [KO:K01937] [EC:6.3.4.2]
106451348  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
106377480  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
106381609  CTP synthase [KO:K01937] [EC:6.3.4.2]
106389858  CTP synthase [KO:K01937] [EC:6.3.4.2]
106398952  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
106422081  CTP synthase [KO:K01937] [EC:6.3.4.2]
106421134  CTP synthase-like isoform X1 [KO:K01937] [EC:6.3.4.2]
106411488  CTP synthase isoform X1 [KO:K01937] [EC:6.3.4.2]
111210395  CTP synthase 1 [KO:K01937] [EC:6.3.4.2]
125577882  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
125590232  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
125606741  CTP synthase-like isoform X1 [KO:K01937] [EC:6.3.4.2]
125609335  CTP synthase 1-like [KO:K01937] [EC:6.3.4.2]
106361847  inorganic pyrophosphatase TTM2-like isoform X1 [KO:K00876] [EC:2.7.1.48]
106349278  uridine/cytidine kinase UKL1, chloroplastic-like [KO:K00876] [EC:2.7.1.48]
106354094  uridine kinase-like protein 3 [KO:K00876] [EC:2.7.1.48]
106371365  uridine kinase-like protein 4 [KO:K00876] [EC:2.7.1.48]
106445161  uridine kinase-like protein 4 [KO:K00876] [EC:2.7.1.48]
106428860  uridine kinase-like protein 5 [KO:K00876] [EC:2.7.1.48]
106428295  uridine kinase-like protein 4 [KO:K00876] [EC:2.7.1.48]
106380436  uridine kinase-like protein 4 [KO:K00876] [EC:2.7.1.48]
106376960  uridine/cytidine kinase UKL1, chloroplastic [KO:K00876] [EC:2.7.1.48]
106381223  inorganic pyrophosphatase TTM1 isoform X2 [KO:K00876] [EC:2.7.1.48]
106381360  inorganic pyrophosphatase TTM1-like isoform X1 [KO:K00876] [EC:2.7.1.48]
106389340  uridine/cytidine kinase UKL1, chloroplastic-like isoform X2 [KO:K00876] [EC:2.7.1.48]
106392184  uridine kinase-like protein 3 [KO:K00876] [EC:2.7.1.48]
106391045  uridine/cytidine kinase UKL1, chloroplastic isoform X1 [KO:K00876] [EC:2.7.1.48]
106395613  uridine kinase-like protein 5 [KO:K00876] [EC:2.7.1.48]
106402052  uridine/cytidine kinase UKL1, chloroplastic [KO:K00876] [EC:2.7.1.48]
111213407  uridine/cytidine kinase UKL1, chloroplastic [KO:K00876] [EC:2.7.1.48]
106416261  inorganic pyrophosphatase TTM2 [KO:K00876] [EC:2.7.1.48]
106361913  inorganic pyrophosphatase TTM2 [KO:K00876] [EC:2.7.1.48]
106425614  inorganic pyrophosphatase TTM2 [KO:K00876] [EC:2.7.1.48]
106354244  5'-nucleotidase SurE-like isoform X2 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
106360618  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
106363852  uncharacterized protein LOC106363852 isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
106399614  5'-nucleotidase SurE-like [KO:K03787] [EC:3.1.3.5 3.1.3.6]
106435433  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
106381282  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
106399584  5'-nucleotidase SurE-like [KO:K03787] [EC:3.1.3.5 3.1.3.6]
106402542  5'-nucleotidase SurE-like isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
106402609  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
106402682  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
106397003  uncharacterized protein LOC106397003 [KO:K01240] [EC:3.2.2.3]
106451122  uridine nucleosidase 1 [KO:K01240] [EC:3.2.2.3]
106437903  uridine nucleosidase 1 [KO:K01240] [EC:3.2.2.3]
106388125  uridine nucleosidase 1 [KO:K01240] [EC:3.2.2.3]
106390641  uridine nucleosidase 1-like [KO:K01240] [EC:3.2.2.3]
125575031  uridine nucleosidase 1-like [KO:K01240] [EC:3.2.2.3]
125577204  probable uridine nucleosidase 2 [KO:K01240] [EC:3.2.2.3]
106419853  probable uridine nucleosidase 2 [KO:K01240] [EC:3.2.2.3]
106352846  uracil phosphoribosyltransferase, chloroplastic [KO:K00761] [EC:2.4.2.9]
106382781  uracil phosphoribosyltransferase, chloroplastic [KO:K00761] [EC:2.4.2.9]
106407174  uracil phosphoribosyltransferase, chloroplastic [KO:K00761] [EC:2.4.2.9]
106411964  uracil phosphoribosyltransferase, chloroplastic [KO:K00761] [EC:2.4.2.9]
106451661  pseudouridine-5'-phosphate glycosidase isoform X1 [KO:K16329] [EC:4.2.1.70]
106402769  pseudouridine-5'-phosphate glycosidase [KO:K16329] [EC:4.2.1.70]
106402924  pseudouridine-5'-phosphate glycosidase-like [KO:K16329] [EC:4.2.1.70]
106412011  pseudouridine-5'-phosphate glycosidase 2 isoform X1 [KO:K16329] [EC:4.2.1.70]
125608522  pseudouridine-5'-phosphate glycosidase-like isoform X1 [KO:K16329] [EC:4.2.1.70]
106438138  7-methylguanosine phosphate-specific 5'-nucleotidase A [KO:K24242] [EC:3.1.3.91]
106410836  7-methylguanosine phosphate-specific 5'-nucleotidase A-like isoform X1 [KO:K24242] [EC:3.1.3.91]
106386310  cytidine deaminase 1-like [KO:K01489] [EC:3.5.4.5]
106400856  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
106417011  cytidine deaminase 6 [KO:K01489] [EC:3.5.4.5]
106414146  cytidine deaminase 1-like [KO:K01489] [EC:3.5.4.5]
106373250  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
125590133  cytidine deaminase 6-like [KO:K01489] [EC:3.5.4.5]
125590135  cytidine deaminase 1-like [KO:K01489] [EC:3.5.4.5]
106361503  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
106419087  ribonucleoside-diphosphate reductase large subunit isoform X1 [KO:K10807] [EC:1.17.4.1]
106381982  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
111198774  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
111208734  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
111202266  ribonucleoside-diphosphate reductase large subunit isoform X1 [KO:K10807] [EC:1.17.4.1]
106448290  ribonucleoside-diphosphate reductase large subunit isoform X1 [KO:K10807] [EC:1.17.4.1]
106357872  ribonucleoside-diphosphate reductase small chain A [KO:K10808] [EC:1.17.4.1]
106349286  ribonucleoside-diphosphate reductase small chain C-like [KO:K10808] [EC:1.17.4.1]
106376966  ribonucleoside-diphosphate reductase small chain C [KO:K10808] [EC:1.17.4.1]
106389330  ribonucleoside-diphosphate reductase small chain C [KO:K10808] [EC:1.17.4.1]
106390064  ribonucleoside-diphosphate reductase small chain C [KO:K10808] [EC:1.17.4.1]
106402112  ribonucleoside-diphosphate reductase small chain C [KO:K10808] [EC:1.17.4.1]
106452903  ribonucleoside-diphosphate reductase small chain A [KO:K10808] [EC:1.17.4.1]
106405862  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
111213284  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
106361849  5'-deoxynucleotidase HDDC2 [KO:K07023] [EC:3.1.3.89]
106361916  5'-deoxynucleotidase HDDC2 isoform X2 [KO:K07023] [EC:3.1.3.89]
106446609  5'-deoxynucleotidase HDDC2 [KO:K07023] [EC:3.1.3.89]
106411766  5'-deoxynucleotidase HDDC2 [KO:K07023] [EC:3.1.3.89]
111215051  5'-deoxynucleotidase HDDC2-like [KO:K07023] [EC:3.1.3.89]
106368636  5'-deoxynucleotidase HDDC2-like [KO:K07023] [EC:3.1.3.89]
106376557  deoxycytidylate deaminase-like [KO:K01493] [EC:3.5.4.12]
106416303  deoxycytidylate deaminase [KO:K01493] [EC:3.5.4.12]
106420380  thymidylate kinase-like isoform X1 [KO:K00943] [EC:2.7.4.9]
106347560  deoxyuridine 5'-triphosphate nucleotidohydrolase-like [KO:K01520] [EC:3.6.1.23]
106352751  deoxyuridine 5'-triphosphate nucleotidohydrolase-like [KO:K01520] [EC:3.6.1.23]
106377278  thymidine kinase b-like [KO:K00857] [EC:2.7.1.21]
106377279  thymidine kinase b [KO:K00857] [EC:2.7.1.21]
106388996  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
106401596  LOW QUALITY PROTEIN: thymidine kinase a [KO:K00857] [EC:2.7.1.21]
106427948  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
106452874  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
111204507  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
125580432  thymidine kinase a-like [KO:K00857] [EC:2.7.1.21]
125600764  thymidine kinase a-like [KO:K00857] [EC:2.7.1.21]
106354095  bifunctional dihydrofolate reductase-thymidylate synthase 2 isoform X3 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
106406829  bifunctional dihydrofolate reductase-thymidylate synthase 1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
106393759  bifunctional dihydrofolate reductase-thymidylate synthase 2-like isoform X1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
125575152  bifunctional dihydrofolate reductase-thymidylate synthase 2-like isoform X1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
106384507  bifunctional dihydrofolate reductase-thymidylate synthase 1-like isoform X1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
106442422  bifunctional dihydrofolate reductase-thymidylate synthase 1-like [KO:K13998] [EC:1.5.1.3 2.1.1.45]
106347415  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic [KO:K00207] [EC:1.3.1.2]
106429281  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic [KO:K00207] [EC:1.3.1.2]
106427199  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic [KO:K00207] [EC:1.3.1.2]
106452022  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic-like [KO:K00207] [EC:1.3.1.2]
106435966  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic [KO:K00207] [EC:1.3.1.2]
106372355  dihydropyrimidinase-like [KO:K01464] [EC:3.5.2.2]
106424521  dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
106348055  beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
106426648  beta-ureidopropionase-like [KO:K01431] [EC:3.5.1.6]
106371746  beta-ureidopropionase-like [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
bna00030  Pentose phosphate pathway
bna00220  Arginine biosynthesis
bna00250  Alanine, aspartate and glutamate metabolism
bna00280  Valine, leucine and isoleucine degradation
bna00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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