KEGG   PATHWAY: ccay03250
Entry
ccay03250                   Pathway                                
Name
Viral life cycle - HIV-1 - Caretta caretta (Loggerhead turtle)
Class
Genetic Information Processing; Information processing in viruses
Pathway map
ccay03250  Viral life cycle - HIV-1
ccay03250

Organism
Caretta caretta (Loggerhead turtle) [GN:ccay]
Gene
125631022  LOW QUALITY PROTEIN: C-C chemokine receptor type 5-like [KO:K04180]
125631023  LOW QUALITY PROTEIN: C-C chemokine receptor type 5-like [KO:K04180]
125631712  C-C chemokine receptor type 5-like [KO:K04180]
125631713  C-C chemokine receptor type 5-like [KO:K04180]
125631719  C-C chemokine receptor type 5-like [KO:K04180]
125645168  CXCR4; C-X-C chemokine receptor type 4 [KO:K04189]
125622609  CD4; T-cell surface glycoprotein CD4 [KO:K06454]
125627126  MAP1S; microtubule-associated protein 1S [KO:K10429]
125637374  MAP1B; microtubule-associated protein 1B isoform X1 [KO:K10429]
125643619  MAP1A; microtubule-associated protein 1A isoform X1 [KO:K10429]
125625350  FEZ1; fasciculation and elongation protein zeta-1 isoform X1 [KO:K25663]
125639658  BICD2; protein bicaudal D homolog 2 isoform X1 [KO:K18739]
125626594  BICD1; protein bicaudal D homolog 1 isoform X1 [KO:K18739]
125628034  protein bicaudal D homolog 2-like isoform X1 [KO:K18739]
125622144  SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1 [KO:K22544] [EC:3.1.5.-]
125637134  PSIP1; PC4 and SFRS1-interacting protein isoform X1 [KO:K25057]
125627606  PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
125623230  SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1 [KO:K11648]
125626344  PPIA; peptidyl-prolyl cis-trans isomerase A [KO:K03767] [EC:5.2.1.8]
125630205  CPSF6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 [KO:K14398]
125637721  CPSF7; cleavage and polyadenylation specificity factor subunit 7 [KO:K14398]
125630618  TNPO3; transportin-3 [KO:K15436]
125643430  interferon-induced GTP-binding protein Mx1-like [KO:K14754]
125643437  interferon-induced GTP-binding protein Mx1-like [KO:K14754]
125643514  interferon-induced GTP-binding protein Mx1-like [KO:K14754]
125639418  RGPD4; ranBP2-like and GRIP domain-containing protein 4 isoform X1 [KO:K12172] [EC:2.3.2.-]
125632152  NUP153; nuclear pore complex protein Nup153 isoform X1 [KO:K14296]
125629580  EP300; histone acetyltransferase p300 isoform X1 [KO:K04498] [EC:2.3.1.48]
125644386  CREB-binding protein isoform X1 [KO:K04498] [EC:2.3.1.48]
125626674  KAT2A; histone acetyltransferase KAT2A isoform X1 [KO:K06062] [EC:2.3.1.48]
125631609  KAT2B; LOW QUALITY PROTEIN: histone acetyltransferase KAT2B [KO:K06062] [EC:2.3.1.48]
125623335  CDK9; cyclin-dependent kinase 9 [KO:K02211] [EC:2.7.11.22 2.7.11.23]
125627437  CCNT1; cyclin-T1 isoform X1 [KO:K15188]
125644762  CCNT2; cyclin-T2 isoform X1 [KO:K15188]
125640936  AFF4; AF4/FMR2 family member 4 isoform X1 [KO:K15185]
125627092  ELL; RNA polymerase II elongation factor ELL [KO:K15183]
125636840  ELL2; LOW QUALITY PROTEIN: RNA polymerase II elongation factor ELL2 [KO:K15183]
125643438  ELL3; RNA polymerase II elongation factor ELL3 [KO:K15183]
125627267  MLLT1; protein ENL isoform X1 [KO:K15187]
125637043  MLLT3; protein AF-9 isoform X1 [KO:K15187]
125636240  NELFA; negative elongation factor A [KO:K15179]
125623507  NELFB; negative elongation factor B [KO:K15180]
125622233  NELFCD; negative elongation factor C/D isoform X1 [KO:K15181]
125620993  NELFE; negative elongation factor E [KO:K15182]
125623901  SUPT4H1; transcription elongation factor SPT4 [KO:K15171]
125627866  SUPT5H; transcription elongation factor SPT5 isoform X1 [KO:K15172]
125633465  XPO1; exportin-1 isoform X1 [KO:K14290]
125622989  RAN; GTP-binding nuclear protein Ran [KO:K07936]
125643435  FURIN; furin [KO:K01349] [EC:3.4.21.75]
125622106  SERINC3; serine incorporator 3 [KO:K25661]
125636494  SERINC5; serine incorporator 5 isoform X1 [KO:K25655]
125621035  HGS; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182]
125639208  TSG101; tumor susceptibility gene 101 protein isoform X1 [KO:K12183]
125621713  CHMP6; charged multivesicular body protein 6 [KO:K12195]
125622288  CHMP4B; charged multivesicular body protein 4b isoform X1 [KO:K12194]
125631764  programmed cell death 6-interacting protein isoform X1 [KO:K12200]
125632060  VPS4B; vacuolar protein sorting-associated protein 4B [KO:K12196]
125645314  VPS4A; vacuolar protein sorting-associated protein 4A isoform X1 [KO:K12196]
Reference
PMID:27357278
  Authors
Li G, De Clercq E
  Title
HIV Genome-Wide Protein Associations: a Review of 30 Years of Research.
  Journal
Microbiol Mol Biol Rev 80:679-731 (2016)
DOI:10.1128/MMBR.00065-15
Reference
PMID:21284899
  Authors
Tagliamonte M, Tornesello ML, Buonaguro FM, Buonaguro L
  Title
Conformational HIV-1 envelope on particulate structures: a tool for chemokine coreceptor binding studies.
  Journal
J Transl Med 9 Suppl 1:S1 (2011)
DOI:10.1186/1479-5876-9-S1-S1
Reference
PMID:31028522
  Authors
Novikova M, Zhang Y, Freed EO, Peng K
  Title
Multiple Roles of HIV-1 Capsid during the Virus Replication Cycle.
  Journal
Virol Sin 34:119-134 (2019)
DOI:10.1007/s12250-019-00095-3
Reference
PMID:30286189
  Authors
Rawle DJ, Harrich D
  Title
Toward the "unravelling" of HIV: Host cell factors involved in HIV-1 core uncoating.
  Journal
PLoS Pathog 14:e1007270 (2018)
DOI:10.1371/journal.ppat.1007270
Reference
PMID:25036886
  Authors
Le Sage V, Mouland AJ, Valiente-Echeverria F
  Title
Roles of HIV-1 capsid in viral replication and immune evasion.
  Journal
Virus Res 193:116-29 (2014)
DOI:10.1016/j.virusres.2014.07.010
Reference
PMID:32429351
  Authors
Murphy RE, Saad JS
  Title
The Interplay between HIV-1 Gag Binding to the Plasma Membrane and Env Incorporation.
  Journal
Viruses 12:E548 (2020)
DOI:10.3390/v12050548
Reference
PMID:21360054
  Authors
He N, Zhou Q
  Title
New insights into the control of HIV-1 transcription: when Tat meets the 7SK snRNP and super elongation complex (SEC).
  Journal
J Neuroimmune Pharmacol 6:260-8 (2011)
DOI:10.1007/s11481-011-9267-6
Reference
PMID:19865606
  Authors
Pincetic A, Leis J
  Title
The Mechanism of Budding of Retroviruses From Cell Membranes.
  Journal
Adv Virol 2009:6239691-6239699 (2009)
DOI:10.1155/2009/623969
Reference
PMID:32858867
  Authors
Kleinpeter AB, Freed EO
  Title
HIV-1 Maturation: Lessons Learned from Inhibitors.
  Journal
Viruses 12:E940 (2020)
DOI:10.3390/v12090940
Related
pathway
ccay03013  Nucleocytoplasmic transport
ccay04144  Endocytosis
KO pathway
ko03250   
LinkDB

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