KEGG   PATHWAY: cmk04146
Entry
cmk04146                    Pathway                                
Name
Peroxisome - Callorhinchus milii (elephant shark)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
cmk04146  Peroxisome
cmk04146

Other DBs
GO: 0005777
Organism
Callorhinchus milii (elephant shark) [GN:cmk]
Gene
103187017  pex3; peroxisomal biogenesis factor 3 [KO:K13336]
103174644  ATP-binding cassette sub-family D member 3 isoform X1 [KO:K05677] [EC:7.6.2.4]
103184872  pex1; peroxisome biogenesis factor 1 [KO:K13338]
103181665  peroxisome assembly factor 2 [KO:K13339]
103178323  pex7; peroxisomal biogenesis factor 7 [KO:K13341]
103175899  pex5la; PEX5-related protein [KO:K13342]
103184248  pex14; peroxisomal membrane protein PEX14 [KO:K13343]
103178014  pex13; peroxisome biogenesis factor 13 [KO:K13344]
103180699  pex12; peroxisome assembly protein 12 [KO:K13345]
103184216  pex10; peroxisome biogenesis factor 10 isoform X1 [KO:K13346]
103174585  pex2; peroxisome biogenesis factor 2 [KO:K06664]
103184064  pxmp2; peroxisomal membrane protein 2 [KO:K13347]
103182009  mpv17l2; mpv17-like protein 2 [KO:K13348]
103185797  mpv17; protein Mpv17 [KO:K13348]
103178785  mpv17l; mpv17-like protein [KO:K13349]
103188637  pxmp4; peroxisomal membrane protein 4 [KO:K13350]
103188375  peroxisomal membrane protein 11A isoform X1 [KO:K13352]
103181969  pex11g; peroxisomal membrane protein 11C [KO:K13353]
103178738  peroxisomal membrane protein PMP34 [KO:K13354]
103189225  peroxisomal membrane protein PMP34 [KO:K13354]
103181261  hacl1; 2-hydroxyacyl-CoA lyase 1 isoform X1 [KO:K12261] [EC:4.1.2.63]
103184877  amacr; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
103190516  phyh; phytanoyl-CoA dioxygenase, peroxisomal isoform X1 [KO:K00477] [EC:1.14.11.18]
103177355  acox3; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
103175663  acox1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
103179753  peroxisomal acyl-coenzyme A oxidase 2 [KO:K10214] [EC:1.17.99.3]
103181119  hsd17b4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
103185291  scp2a; sterol carrier protein 2 [KO:K08764] [EC:2.3.1.176]
103191285  acaa1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
103178764  decr2; peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing] [KO:K13237] [EC:1.3.1.124]
103188279  ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
103186799  abcd4; LOW QUALITY PROTEIN: ATP-binding cassette sub-family D member 4 [KO:K05678] [EC:7.6.2.8]
103186490  very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
103178869  acsl4a; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
103175318  long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
103178211  acsl1a; long-chain-fatty-acid--CoA ligase 1a isoform X1 [KO:K01897] [EC:6.2.1.3]
103186542  acsl5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
103183672  long-chain-fatty-acid--CoA ligase 6 isoform X1 [KO:K01897] [EC:6.2.1.3]
103189810  pecr; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
103184564  eci2; enoyl-CoA delta isomerase 2, mitochondrial [KO:K13239] [EC:5.3.3.8]
103189152  nudt7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
103178406  nudt12; peroxisomal NADH pyrophosphatase NUDT12 isoform X1 [KO:K03426] [EC:3.6.1.22]
103181230  nudt13; nucleoside diphosphate-linked moiety X motif 13 [KO:K03426] [EC:3.6.1.22]
103191413  nudt19; nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.77]
103191249  acot8; acyl-coenzyme A thioesterase 8 isoform X1 [KO:K11992] [EC:3.1.2.27]
103184686  crata; carnitine O-acetyltransferase isoform X1 [KO:K00624] [EC:2.3.1.7]
103181560  crot; LOW QUALITY PROTEIN: peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
103175949  mlycd; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
103180557  gnpat; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
103176581  agps; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
103175059  fatty acyl-CoA reductase 1 isoform X2 [KO:K13356] [EC:1.2.1.84]
103186227  si:dkey-97m3.1; fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
103184027  mvk; mevalonate kinase isoform X1 [KO:K00869] [EC:2.7.1.36]
103188322  serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
103184038  dao; D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
103178961  ddo; D-aspartate oxidase isoform X1 [KO:K00272] [EC:1.4.3.1]
103187483  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
103182930  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
103182165  paox; peroxisomal N(1)-acetyl-spermine/spermidine oxidase isoform X1 [KO:K00308] [EC:1.5.3.13]
103178487  peroxisomal N(1)-acetyl-spermine/spermidine oxidase [KO:K00308] [EC:1.5.3.13]
103183351  pipox; peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
103188695  hmgcl; hydroxymethylglutaryl-CoA lyase, mitochondrial isoform X1 [KO:K01640] [EC:4.1.3.4]
103179011  hmgcll1; 3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic [KO:K01640] [EC:4.1.3.4]
103180177  hao2; hydroxyacid oxidase 2 isoform X1 [KO:K11517] [EC:1.1.3.15]
103177796  uncharacterized protein LOC103177796 [KO:K11517] [EC:1.1.3.15]
103186438  hao1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
103186029  cat; LOW QUALITY PROTEIN: catalase [KO:K03781] [EC:1.11.1.6]
103185515  superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
103185516  superoxide dismutase [Cu-Zn] isoform X1 [KO:K04565] [EC:1.15.1.1]
103185517  superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
103185518  superoxide dismutase [Cu-Zn]-like [KO:K04565] [EC:1.15.1.1]
103178906  sod2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
103183299  nos2b; nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
103182772  prdx1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
103187586  prdx2; peroxiredoxin-2 [KO:K13279] [EC:1.11.1.24]
103182679  xanthine dehydrogenase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
103187630  xdh; xanthine dehydrogenase/oxidase isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
103186045  LOW QUALITY PROTEIN: dehydrogenase/reductase SDR family member 4-like [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
cmk00071  Fatty acid degradation
cmk00120  Primary bile acid biosynthesis
cmk00230  Purine metabolism
cmk00564  Glycerophospholipid metabolism
cmk00565  Ether lipid metabolism
cmk00830  Retinol metabolism
cmk00900  Terpenoid backbone biosynthesis
cmk03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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