KEGG   PATHWAY: cola00020
Entry
cola00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Colwellia sp. Arc7-D
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cola00020  Citrate cycle (TCA cycle)
cola00020

Module
cola_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cola00020]
cola_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cola00020]
cola_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cola00020]
cola_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cola00020]
cola_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cola00020]
Other DBs
GO: 0006099
Organism
Colwellia sp. Arc7-D [GN:cola]
Gene
DBO93_07315  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DBO93_10260  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
DBO93_14650  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
DBO93_16025  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DBO93_08845  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DBO93_08850  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DBO93_11315  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
DBO93_07340  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DBO93_07345  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
DBO93_16040  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DBO93_07355  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DBO93_07350  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DBO93_07330  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DBO93_07335  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DBO93_07320  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DBO93_07325  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DBO93_13345  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DBO93_17045  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
DBO93_16235  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DBO93_00855  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
DBO93_16050  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DBO93_16045  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cola00010  Glycolysis / Gluconeogenesis
cola00061  Fatty acid biosynthesis
cola00071  Fatty acid degradation
cola00190  Oxidative phosphorylation
cola00220  Arginine biosynthesis
cola00250  Alanine, aspartate and glutamate metabolism
cola00280  Valine, leucine and isoleucine degradation
cola00350  Tyrosine metabolism
cola00470  D-Amino acid metabolism
cola00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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