KEGG   PATHWAY: cqu03015
Entry
cqu03015                    Pathway                                
Name
mRNA surveillance pathway - Culex quinquefasciatus (southern house mosquito)
Description
The mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go decay (NGD). NMD is a mechanism that eliminates mRNAs containing premature translation-termination codons (PTCs). In vertebrates, PTCs trigger efficient NMD when located upstream of an exon junction complex (EJC). Upf3, together with Upf1 and Upf2, may signal the presence of the PTC to the 5'end of the transcript, resulting in decapping and rapid exonucleolytic digestion of the mRNA. In the NSD pathway, which targets mRNAs lacking termination codons, the ribosome is believed to translate through the 3' untranslated region and stall at the end of the poly(A) tail. NSD involves an eRF3-like protein, Ski7p, which is hypothesized to bind the empty A site of the ribosome and recruit the exosome to degrade the mRNA from the 3' end. NGD targets mRNAs with stalls in translation elongation for endonucleolytic cleavage in a process involving the Dom34 and Hbs1 proteins.
Class
Genetic Information Processing; Translation
Pathway map
cqu03015  mRNA surveillance pathway
cqu03015

Other DBs
GO: 0071028
Organism
Culex quinquefasciatus (southern house mosquito) [GN:cqu]
Gene
CpipJ_CPIJ013054  nuclear cap-binding protein subunit 1 [KO:K12882]
CpipJ_CPIJ013057  conserved hypothetical protein [KO:K12882]
CpipJ_CPIJ003555  nuclear cap-binding protein subunit 2 [KO:K12883]
CpipJ_CPIJ005437  conserved hypothetical protein [KO:K14328]
CpipJ_CPIJ007339  RNA-binding protein 8A [KO:K12876]
CpipJ_CPIJ002949  mago nashi [KO:K12877]
CpipJ_CPIJ003232  conserved hypothetical protein [KO:K14323]
CpipJ_CPIJ019131  DEAD box ATP-dependent RNA helicase [KO:K13025] [EC:5.6.2.7]
CpipJ_CPIJ019983  histone deacetylase complex subunit SAP18 [KO:K14324]
CpipJ_CPIJ016843  histone deacetylase complex subunit SAP18 [KO:K14324]
CpipJ_CPIJ003278  pinn [KO:K13114]
CpipJ_CPIJ004841  conserved hypothetical protein [KO:K12875]
CpipJ_CPIJ001780  conserved hypothetical protein [KO:K14325]
CpipJ_CPIJ007834  RNA and export factor binding protein [KO:K12881]
CpipJ_CPIJ003743  DEAD-box helicase Dbp80 [KO:K18655] [EC:5.6.2.7]
CpipJ_CPIJ014147  nucleoporin GLE1 [KO:K18723]
CpipJ_CPIJ014148  conserved hypothetical protein [KO:K18723]
CpipJ_CPIJ001995  conserved hypothetical protein [KO:K14284]
CpipJ_CPIJ012645  nuclear RNA export factor 2 [KO:K14284]
CpipJ_CPIJ019405  p15-2a protein [KO:K14285]
CpipJ_CPIJ014241  ATP-dependent RNA helicase WM6 [KO:K12812] [EC:5.6.2.7]
CpipJ_CPIJ006916  conserved hypothetical protein [KO:K14294]
CpipJ_CPIJ003014  conserved hypothetical protein [KO:K13171]
CpipJ_CPIJ018510  mRNA capping enzyme [KO:K13917] [EC:2.7.7.50 3.6.1.74]
CpipJ_CPIJ005791  mRNA cap guanine-N7 methyltransferase [KO:K00565] [EC:2.1.1.56]
CpipJ_CPIJ013420  mRNA cap guanine-N7 methyltransferase [KO:K00565] [EC:2.1.1.56]
CpipJ_CPIJ019098  mRNA (guanine-7-)methyltransferase [KO:K00565] [EC:2.1.1.56]
CpipJ_CPIJ004742  mRNA (guanine-7-)methyltransferase [KO:K00565] [EC:2.1.1.56]
CpipJ_CPIJ006342  conserved hypothetical protein [KO:K13098]
CpipJ_CPIJ014288  TAR DNA-binding protein 43 [KO:K23600]
CpipJ_CPIJ004581  polyadenylate-binding protein 2 [KO:K14396]
CpipJ_CPIJ005795  hypothetical protein [KO:K14396]
CpipJ_CPIJ014870  pre-mRNA cleavage factor im, 25kD subunit [KO:K14397]
CpipJ_CPIJ004892  conserved hypothetical protein [KO:K14398]
CpipJ_CPIJ002045  Poly(A) polymerase alpha [KO:K14376] [EC:2.7.7.19]
CpipJ_CPIJ006529  Poly(A) polymerase gamma [KO:K14376] [EC:2.7.7.19]
CpipJ_CPIJ011744  poly a polymerase [KO:K14376] [EC:2.7.7.19]
CpipJ_CPIJ016239  poly a polymerase [KO:K14376] [EC:2.7.7.19]
CpipJ_CPIJ014836  Poly(A) polymerase gamma [KO:K14376] [EC:2.7.7.19]
CpipJ_CPIJ004584  poly a polymerase [KO:K14376] [EC:2.7.7.19]
CpipJ_CPIJ012940  Poly(A) polymerase beta [KO:K14376] [EC:2.7.7.19]
CpipJ_CPIJ000183  pre-mRNA cleavage complex II protein Clp1 [KO:K14399] [EC:2.7.1.78]
CpipJ_CPIJ001187  conserved hypothetical protein [KO:K14400]
CpipJ_CPIJ001186  conserved hypothetical protein [KO:K14400]
CpipJ_CPIJ009643  cleavage and polyadenylation specificity factor subunit 2 [KO:K14402]
CpipJ_CPIJ015409  cleavage and polyadenylation specificity factor [KO:K14403] [EC:3.1.27.-]
CpipJ_CPIJ009192  cleavage and polyadenylation specificity factor subunit 4 [KO:K14404]
CpipJ_CPIJ011587  conserved hypothetical protein [KO:K14405]
CpipJ_CPIJ007510  wd-repeat protein [KO:K15542]
CpipJ_CPIJ005918  WD repeat protein 82 [KO:K14962]
CpipJ_CPIJ008212  phosphatase-1 [KO:K06269] [EC:3.1.3.16]
CpipJ_CPIJ001987  phosphatase-1 [KO:K06269] [EC:3.1.3.16]
CpipJ_CPIJ019639  phosphatase SSU72 [KO:K15544] [EC:3.1.3.16]
CpipJ_CPIJ007587  phosphatase SSU72 [KO:K15544] [EC:3.1.3.16]
CpipJ_CPIJ007586  RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [KO:K15544] [EC:3.1.3.16]
CpipJ_CPIJ018254  cleavage stimulation factor 50 kDa subunit [KO:K14406]
CpipJ_CPIJ012662  cleavage stimulation factor 64 kDa subunit [KO:K14407]
CpipJ_CPIJ003799  suppressor of forked [KO:K14408]
CpipJ_CPIJ011126  symplekin [KO:K06100]
CpipJ_CPIJ015262  heterogeneous nuclear ribonucleoprotein 27C [KO:K14411]
CpipJ_CPIJ006948  heterogeneous nuclear ribonucleoprotein [KO:K14411]
CpipJ_CPIJ008628  predicted protein [KO:K14411]
CpipJ_CPIJ003052  conserved hypothetical protein [KO:K14411]
CpipJ_CPIJ007980  polyadenylate-binding protein 1 [KO:K13126]
CpipJ_CPIJ007218  conserved hypothetical protein [KO:K13126]
CpipJ_CPIJ007219  polyadenylate-binding protein [KO:K13126]
CpipJ_CPIJ006149  eukaryotic peptide chain release factor subunit [KO:K03265]
CpipJ_CPIJ007053  conserved hypothetical protein [KO:K03267]
CpipJ_CPIJ020103  conserved hypothetical protein [KO:K03267]
CpipJ_CPIJ012300  nonsense-mediated mRNA decay protein 1 [KO:K14326] [EC:5.6.2.5 5.6.2.3]
CpipJ_CPIJ009309  conserved hypothetical protein [KO:K14327]
CpipJ_CPIJ003189  serine/threonine-protein kinase Smg1 [KO:K08873] [EC:2.7.11.1]
CpipJ_CPIJ003187  conserved hypothetical protein [KO:K08873] [EC:2.7.11.1]
CpipJ_CPIJ006427  smg-7 [KO:K11125]
CpipJ_CPIJ018772  conserved hypothetical protein [KO:K11124] [EC:3.1.-.-]
CpipJ_CPIJ013232  phsophatase-2a [KO:K04382] [EC:3.1.3.16]
CpipJ_CPIJ003532  serine/threonine protein phosphatase 2a regulatory subunit a [KO:K03456]
CpipJ_CPIJ012989  phosphatase pp2a regulatory subunit b [KO:K04354]
CpipJ_CPIJ003227  phosphatase 2 [KO:K11583]
CpipJ_CPIJ002038  conserved hypothetical protein [KO:K11583]
CpipJ_CPIJ019419  serine/threonine protein phosphatase 2A [KO:K11584]
CpipJ_CPIJ001692  conserved hypothetical protein [KO:K11584]
CpipJ_CPIJ014698  serine/threonine protein phosphatase 2A [KO:K11584]
CpipJ_CPIJ014701  phosphatase 2a, regulatory subunit [KO:K11584]
CpipJ_CPIJ013330  eukaryotic peptide chain release factor GTP-binding subunit [KO:K14416]
CpipJ_CPIJ005823  pelota [KO:K06965]
Reference
  Authors
Maquat LE
  Title
Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics.
  Journal
Nat Rev Mol Cell Biol 5:89-99 (2004)
DOI:10.1038/nrm1310
Reference
  Authors
Amrani N, Sachs MS, Jacobson A
  Title
Early nonsense: mRNA decay solves a translational problem.
  Journal
Nat Rev Mol Cell Biol 7:415-25 (2006)
DOI:10.1038/nrm1942
Reference
  Authors
Eulalio A, Behm-Ansmant I, Izaurralde E
  Title
P bodies: at the crossroads of post-transcriptional pathways.
  Journal
Nat Rev Mol Cell Biol 8:9-22 (2007)
DOI:10.1038/nrm2080
Reference
  Authors
Mandel CR, Bai Y, Tong L
  Title
Protein factors in pre-mRNA 3'-end processing.
  Journal
Cell Mol Life Sci 65:1099-122 (2008)
DOI:10.1007/s00018-007-7474-3
Reference
  Authors
Clement SL, Lykke-Andersen J
  Title
No mercy for messages that mess with the ribosome.
  Journal
Nat Struct Mol Biol 13:299-301 (2006)
DOI:10.1038/nsmb0406-299
Related
pathway
cqu03013  Nucleocytoplasmic transport
cqu03018  RNA degradation
cqu03040  Spliceosome
KO pathway
ko03015   
LinkDB

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