KEGG   PATHWAY: dch00020
Entry
dch00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Deinococcus soli
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dch00020  Citrate cycle (TCA cycle)
dch00020

Module
dch_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dch00020]
dch_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dch00020]
dch_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dch00020]
dch_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dch00020]
dch_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dch00020]
Other DBs
GO: 0006099
Organism
Deinococcus soli [GN:dch]
Gene
SY84_09410  citrate synthase [KO:K01647] [EC:2.3.3.1]
SY84_09405  pyruvate carboxyltransferase [KO:K05942] [EC:2.3.3.3]
SY84_12415  citrate synthase [KO:K01659] [EC:2.3.3.5]
SY84_13965  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
SY84_15625  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SY84_13940  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SY84_10455  sucA; 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
SY84_10445  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SY84_07945  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SY84_08120  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SY84_01020  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
SY84_01025  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
SY84_14420  fumarate reductase [KO:K00239] [EC:1.3.5.1]
SY84_14415  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
SY84_14430  succinate dehydrogenase [KO:K00241]
SY84_14425  succinate dehydrogenase [KO:K00242]
SY84_08995  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SY84_11860  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SY84_01430  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
SY84_11490  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
SY84_05485  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
SY84_05490  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
SY84_11495  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dch00010  Glycolysis / Gluconeogenesis
dch00053  Ascorbate and aldarate metabolism
dch00061  Fatty acid biosynthesis
dch00071  Fatty acid degradation
dch00190  Oxidative phosphorylation
dch00220  Arginine biosynthesis
dch00250  Alanine, aspartate and glutamate metabolism
dch00280  Valine, leucine and isoleucine degradation
dch00350  Tyrosine metabolism
dch00470  D-Amino acid metabolism
dch00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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