KEGG   PATHWAY: dpa03008
Entry
dpa03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Dendroctonus ponderosae (mountain pine beetle)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
dpa03008  Ribosome biogenesis in eukaryotes
dpa03008

Organism
Dendroctonus ponderosae (mountain pine beetle) [GN:dpa]
Gene
109539727  casein kinase II subunit beta isoform X1 [KO:K03115]
125504402  casein kinase II subunit beta isoform X1 [KO:K03115]
109540927  casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
109535896  casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
109542629  nucleolar protein 6 [KO:K14544]
109544014  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
109543363  WD repeat-containing protein 43 [KO:K14546]
109546562  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
109544574  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
109544893  WD repeat-containing protein 75 [KO:K14552]
109534318  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
109539186  WD repeat-containing protein 36 isoform X1 [KO:K14554]
109536616  transducin beta-like protein 3 [KO:K14555]
109539476  WD repeat-containing protein 3 [KO:K14556]
109542247  uncharacterized protein LOC109542247 isoform X1 [KO:K14557]
109542261  uncharacterized protein LOC109542261 [KO:K14557]
109544449  periodic tryptophan protein 2 homolog isoform X1 [KO:K14558]
109538945  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
109543932  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
109536563  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
109534336  rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
109542649  nucleolar protein 56 [KO:K14564]
109543291  nucleolar protein 58 [KO:K14565]
109544783  NHP2-like protein 1 homolog [KO:K12845]
109542273  H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
109538566  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
109544817  probable H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
109536968  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
109541690  rRNA-processing protein FCF1 homolog [KO:K14566]
109539430  U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
109535945  ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
109539687  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
109543832  ribosome biogenesis protein BMS1 homolog [KO:K14569]
109534084  RNA cytidine acetyltransferase isoform X1 [KO:K14521] [EC:2.3.1.-]
109541963  probable RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
109541872  ribonucleases P/MRP protein subunit POP1 isoform X2 [KO:K01164] [EC:3.1.26.5]
109543774  uncharacterized protein LOC109543774 [KO:K03538] [EC:3.1.26.5]
109544370  ribonuclease P/MRP protein subunit POP5 isoform X1 [KO:K03537] [EC:3.1.26.5]
109542074  ribonuclease P protein subunit p25-like protein isoform X2 [KO:K14525] [EC:3.1.26.5]
109538949  ribonuclease P protein subunit p20 isoform X1 [KO:K14527] [EC:3.1.26.5]
109539243  ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
109536904  uncharacterized protein LOC109536904 isoform X1 [KO:K14570] [EC:3.1.-.-]
109535428  RNA exonuclease 5 isoform X1 [KO:K14570] [EC:3.1.-.-]
109541739  RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
109541223  oligoribonuclease [KO:K13288] [EC:3.1.-.-]
109540773  5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
109533012  5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
109545674  nucleolar GTP-binding protein 1 [KO:K06943]
109538620  nucleolar GTP-binding protein 2 [KO:K14537]
109539075  guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
109541839  nuclear valosin-containing protein-like [KO:K14571]
109546709  midasin [KO:K14572]
109543088  RNA-binding protein 28 isoform X1 [KO:K14573]
109538606  RNA-binding protein NOB1 [KO:K11883]
109535166  GTP-binding nuclear protein Ran [KO:K07936]
109536570  exportin-1 [KO:K14290]
109535648  60S ribosomal export protein NMD3 [KO:K07562]
109536665  nuclear RNA export factor 1 [KO:K14284]
109533075  NTF2-related export protein [KO:K14285]
109534371  eukaryotic translation initiation factor 6 [KO:K03264]
109539533  ribosome maturation protein SBDS [KO:K14574]
109537174  elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
109538595  large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
109535574  ATPase family protein 2 homolog [KO:K14575]
109539447  adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
109536505  serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
109540080  serine/threonine-protein kinase rio2 [KO:K07179] [EC:2.7.11.1]
125504674  small subunit ribosomal RNA [KO:K01979]
125504675  large subunit ribosomal RNA [KO:K01982]
125504332  5S ribosomal RNA [KO:K01981]
125502697  5S ribosomal RNA [KO:K01981]
125505681  small nucleolar RNA U3 [KO:K14483]
125502700  small nucleolar RNA U3 [KO:K14483]
125504338  small nucleolar RNA U3 [KO:K14483]
125504337  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
dpa03010  Ribosome
KO pathway
ko03008   
LinkDB

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