KEGG   PATHWAY: dpub04814
Entry
dpub04814                   Pathway                                
Name
Motor proteins - Dryobates pubescens (Downy woodpecker)
Class
Cellular Processes; Cell motility
Pathway map
dpub04814  Motor proteins
dpub04814

Organism
Dryobates pubescens (Downy woodpecker) [GN:dpub]
Gene
104304634  DYNC1H1; cytoplasmic dynein 1 heavy chain 1 [KO:K10413]
104296913  DYNC2H1; cytoplasmic dynein 2 heavy chain 1 [KO:K10414]
104304729  DYNC1I2; LOW QUALITY PROTEIN: cytoplasmic dynein 1 intermediate chain 2 [KO:K10415]
104306568  DYNC1I1; cytoplasmic dynein 1 intermediate chain 1 isoform X1 [KO:K10415]
104298321  DYNC1LI1; cytoplasmic dynein 1 light intermediate chain 1 [KO:K10416]
104300832  DYNC1LI2; cytoplasmic dynein 1 light intermediate chain 2 [KO:K10416]
104303426  DYNC2LI1; LOW QUALITY PROTEIN: cytoplasmic dynein 2 light intermediate chain 1 [KO:K10417]
104307778  DYNLL2; dynein light chain 2, cytoplasmic [KO:K10418]
104308437  dynein light chain 1, cytoplasmic [KO:K10418]
104309008  dynein light chain 1, cytoplasmic-like [KO:K10418]
104303868  DYNLRB1; dynein light chain roadblock-type 1 [KO:K10419]
104300838  DYNLRB2; dynein light chain roadblock-type 2 [KO:K10419]
104303533  DYNLT3; dynein light chain Tctex-type 3 [KO:K10420]
104301040  DYNLT1; dynein light chain Tctex-type 1 isoform X1 [KO:K10420]
104305489  TCTE3; tctex1 domain-containing protein 3 [KO:K25419]
104301564  TCTEX1D4; tctex1 domain-containing protein 4 [KO:K25420]
104307528  TCTEX1D1; tctex1 domain-containing protein 1 [KO:K25421]
104302485  LOW QUALITY PROTEIN: dynein heavy chain 9, axonemal-like [KO:K10408]
104297970  DNAH17; dynein heavy chain 17, axonemal [KO:K10408]
104308063  DNAH5; LOW QUALITY PROTEIN: dynein heavy chain 5, axonemal [KO:K10408]
104308369  DNAH10; LOW QUALITY PROTEIN: dynein heavy chain 10, axonemal [KO:K10408]
104308824  DNAH12; dynein heavy chain 12, axonemal [KO:K10408]
104299560  DNAH3; LOW QUALITY PROTEIN: dynein heavy chain 3, axonemal [KO:K10408]
104309297  DNAH7; dynein heavy chain 7, axonemal [KO:K10408]
104305446  DNAH1; LOW QUALITY PROTEIN: dynein heavy chain 1, axonemal [KO:K10408]
104296253  DNAH8; dynein heavy chain 8, axonemal [KO:K10408]
104296863  dynein heavy chain 5, axonemal-like [KO:K10408]
104307815  DNAI1; dynein intermediate chain 1, axonemal [KO:K10409]
104297942  DNAI2; dynein intermediate chain 2, axonemal [KO:K11143]
104300115  WDR63; WD repeat-containing protein 63 [KO:K24722]
104307512  WDR78; WD repeat-containing protein 78 [KO:K24723]
104307413  DNALI1; axonemal dynein light intermediate polypeptide 1 [KO:K10410]
104300357  DNAL1; dynein light chain 1, axonemal [KO:K10411]
104302016  DNAL4; dynein light chain 4, axonemal [KO:K10412]
104308827  DCTN1; LOW QUALITY PROTEIN: dynactin subunit 1 [KO:K04648]
104307818  DCTN3; dynactin subunit 3 [KO:K10425]
104310065  DCTN4; dynactin subunit 4 isoform X1 [KO:K10426]
104306922  DCTN5; dynactin subunit 5 [KO:K10427]
104310335  DCTN6; dynactin subunit 6 [KO:K10428]
104307168  ACTR1A; alpha-centractin [KO:K16575]
104307229  ACTR10; actin-related protein 10 [KO:K16576]
104309183  CAPZA2; F-actin-capping protein subunit alpha-2 [KO:K10364]
104296514  CAPZA1; F-actin-capping protein subunit alpha-1 [KO:K10364]
104299332  CAPZB; F-actin-capping protein subunit beta [KO:K10365]
104308536  CCDC64; bicaudal D-related protein 1 [KO:K16756]
104307680  HOOK3; protein Hook homolog 3 [KO:K16536]
104304551  tubulin alpha-3 chain [KO:K07374]
104300006  TUBAL3; tubulin alpha chain-like 3 isoform X1 [KO:K07374]
104304687  TUBA8; tubulin alpha-8 chain isoform X1 [KO:K07374]
104309733  tubulin alpha-4A chain-like [KO:K07374]
104309734  tubulin alpha-5 chain [KO:K07374]
104300063  tubulin alpha chain-like [KO:K07374]
104300161  tubulin alpha-8 chain [KO:K07374]
104302640  TUBB1; tubulin beta-1 chain isoform X1 [KO:K07375]
104303198  tubulin beta-2 chain-like [KO:K07375]
104303199  LOW QUALITY PROTEIN: tubulin beta-2 chain-like [KO:K07375]
104303768  tubulin beta-3 chain isoform X1 [KO:K07375]
104303818  tubulin beta chain-like [KO:K07375]
104308697  TUBB6; tubulin beta-6 chain [KO:K07375]
104296979  tubulin beta chain [KO:K07375]
104309603  tubulin gamma-1 chain-like [KO:K10389]
104302245  TUBD1; LOW QUALITY PROTEIN: tubulin delta chain [KO:K10390]
104296618  TUBE1; tubulin epsilon chain [KO:K10391]
104308277  KIF5C; kinesin heavy chain isoform 5C [KO:K10396]
104297058  KIF5B; kinesin-1 heavy chain [KO:K10396]
104304150  KLC1; kinesin light chain 1 isoform X1 [KO:K10407]
104300937  KLC4; kinesin light chain 4 [KO:K10407]
104297036  KIF3A; kinesin-like protein KIF3A [KO:K10394]
104301409  KIF3B; kinesin-like protein KIF3B [KO:K20196]
104301609  KIFAP3; LOW QUALITY PROTEIN: kinesin-associated protein 3 [KO:K25388]
104304366  KIF3C; kinesin-like protein KIF3C [KO:K20197]
104305522  KIF1A; kinesin-like protein KIF1A isoform X1 [KO:K10392]
104305854  KIF1B; kinesin-like protein KIF1B isoform X1 [KO:K10392]
104305714  kinesin-like protein KIF13A [KO:K17914]
104306758  KIF13B; LOW QUALITY PROTEIN: kinesin-like protein KIF13B [KO:K17914]
104300598  KIF14; kinesin-like protein KIF14 [KO:K17915]
104305976  KIF16B; kinesin-like protein KIF16B isoform X1 [KO:K17916]
104298861  STARD9; LOW QUALITY PROTEIN: stAR-related lipid transfer protein 9 [KO:K16491]
104297012  KIF4A; chromosome-associated kinesin KIF4A [KO:K10395]
104303350  KIF7; LOW QUALITY PROTEIN: kinesin-like protein KIF7 [KO:K18806]
104308953  KIF21A; kinesin-like protein KIF21A [KO:K24185]
104309265  KIF21B; kinesin-like protein KIF21B [KO:K24185]
104302620  KIF27; LOW QUALITY PROTEIN: kinesin-like protein KIF27 [KO:K24186]
104297748  KIF11; kinesin-like protein KIF11 [KO:K10398]
104297783  KIF20B; LOW QUALITY PROTEIN: kinesin-like protein KIF20B [KO:K10402]
104303521  kinesin-like protein KIF20A [KO:K10402]
104303936  KIF20A; kinesin-like protein KIF20A [KO:K10402]
104303310  KIF23; kinesin-like protein KIF23 [KO:K17387]
104307767  CENPE; centromere-associated protein E [KO:K11498]
104300998  KIF18A; kinesin-like protein KIF18A [KO:K10401]
104297766  KIF19; kinesin-like protein KIF19 [KO:K26157]
104296249  KIF6; kinesin-like protein KIF6 [KO:K10397]
104306780  KIF9; kinesin-like protein KIF9 [KO:K10397]
104304563  KIF26A; kinesin-like protein KIF26A [KO:K10404]
104300621  KIF26B; kinesin-like protein KIF26B [KO:K10404]
104302841  kinesin-like protein KIF12 [KO:K10399]
104298342  KIF15; kinesin-like protein KIF15 [KO:K10400]
104307808  KIF24; kinesin-like protein KIF24 [KO:K10393]
104301563  KIF2C; kinesin-like protein KIF2C [KO:K10393]
104306453  KIF2A; kinesin-like protein KIF2A isoform X1 [KO:K10393]
104303250  LOW QUALITY PROTEIN: kinesin-like protein KIFC3 [KO:K10406]
104305492  KIF25; LOW QUALITY PROTEIN: kinesin-like protein KIF25 [KO:K18627]
104302759  MYO1C; unconventional myosin-Ic isoform X1 [KO:K10356]
104308505  MYO1H; unconventional myosin-Ih [KO:K10356]
104309268  unconventional myosin-Ib isoform X1 [KO:K10356]
104309491  MYO1F; LOW QUALITY PROTEIN: unconventional myosin-If [KO:K10356]
104309910  MYO1E; unconventional myosin-Ie [KO:K10356]
104305517  MYO1A; unconventional myosin-Ia [KO:K10356]
104301747  MYO1D; LOW QUALITY PROTEIN: unconventional myosin-Id [KO:K10356]
104306791  MYO1G; LOW QUALITY PROTEIN: unconventional myosin-Ig [KO:K10356]
104298524  MYO3A; LOW QUALITY PROTEIN: myosin-IIIa [KO:K08834] [EC:2.7.11.1]
104304745  MYO3B; LOW QUALITY PROTEIN: myosin-IIIb [KO:K08834] [EC:2.7.11.1]
104304984  unconventional myosin-Vb-like [KO:K10357]
104305587  MYO5A; unconventional myosin-Va [KO:K10357]
104305588  MYO5C; unconventional myosin-Vc [KO:K10357]
104299086  unconventional myosin-VI [KO:K10358]
104306024  MYO7A; unconventional myosin-VIIa [KO:K10359]
104300676  MYO7B; unconventional myosin-VIIb [KO:K21868]
104308634  MYO9B; LOW QUALITY PROTEIN: unconventional myosin-IXb [KO:K10360]
104297182  MYO9A; unconventional myosin-IXa [KO:K10360]
104308052  MYO10; unconventional myosin-X [KO:K12559]
104309725  unconventional myosin-X-like [KO:K12559]
104297551  MYO15A; LOW QUALITY PROTEIN: unconventional myosin-XV [KO:K10361]
104298617  MYO16; unconventional myosin-XVI [KO:K17481]
104302862  MYO18A; unconventional myosin-XVIIIa [KO:K10362]
104308519  MYO18B; unconventional myosin-XVIIIb [KO:K10362]
104307798  MYO19; unconventional myosin-XIX [KO:K25838]
104307700  myosin-3-like [KO:K24220]
104307701  myosin heavy chain, skeletal muscle, adult-like [KO:K24220]
104307702  LOW QUALITY PROTEIN: myosin heavy chain, skeletal muscle, adult-like [KO:K24220]
104307703  LOW QUALITY PROTEIN: myosin-3-like [KO:K24220]
104307704  LOW QUALITY PROTEIN: myosin-3-like [KO:K24220]
104307705  myosin-3-like [KO:K24220]
104303865  MYH7B; LOW QUALITY PROTEIN: myosin-7B [KO:K24220]
104301217  LOW QUALITY PROTEIN: myosin-3-like [KO:K24220]
104301220  myosin heavy chain, skeletal muscle, adult-like [KO:K24220]
104301221  myosin heavy chain, skeletal muscle, adult-like [KO:K24220]
104297085  MYH15; myosin-15 isoform X1 [KO:K24220]
104300688  LOW QUALITY PROTEIN: myosin-6-like [KO:K17751]
104298906  MYH11; myosin-11 isoform X1 [KO:K10352]
104308619  MYH10; myosin-10 [KO:K10352]
104302054  MYH9; myosin-9 [KO:K10352]
104298413  MYL1; myosin light chain 1/3, skeletal muscle isoform isoform X1 [KO:K05738]
104306772  MYL3; myosin light chain 3 [KO:K12749]
104309220  MYL4; myosin light chain 4 [KO:K12750]
104308415  MYL2; myosin regulatory light chain 2, ventricular/cardiac muscle isoform isoform X1 [KO:K10351]
104309404  myosin regulatory light chain 2B, cardiac muscle isoform [KO:K12756]
104303669  myosin regulatory light chain 2, smooth muscle minor isoform isoform X1 [KO:K12757]
104303670  myosin regulatory light polypeptide 9-like [KO:K12757]
104300855  ACTA1; actin, alpha skeletal muscle isoform X1 [KO:K10354]
104297729  ACTA2; actin, aortic smooth muscle isoform X1 [KO:K12313]
104310285  ACTC1; actin, alpha cardiac muscle 1 isoform X1 [KO:K12314]
104297810  ACTG2; actin, gamma-enteric smooth muscle isoform X1 [KO:K12315]
104297951  ACTG1; LOW QUALITY PROTEIN: actin, cytoplasmic 2 [KO:K05692]
104310186  actin, cytoplasmic type 5 isoform X1 [KO:K05692]
104297045  ACTB; actin, cytoplasmic 1 isoform X1 [KO:K05692]
104305431  TNNC1; troponin C, slow skeletal and cardiac muscles [KO:K05865]
104299609  TNNI1; troponin I, slow skeletal muscle [KO:K10371]
104301467  TNNC2; troponin C, skeletal muscle [KO:K12042]
104303178  TNNI2; troponin I, fast skeletal muscle [KO:K12043]
104303175  TNNT3; troponin T, fast skeletal muscle isoform X1 [KO:K12046]
104297195  TNNT2; troponin T, cardiac muscle [KO:K12045]
104308734  TPM1; tropomyosin alpha-1 chain isoform X1 [KO:K10373]
104298233  TPM2; LOW QUALITY PROTEIN: tropomyosin beta chain [KO:K10374]
104301738  LOW QUALITY PROTEIN: tropomyosin beta chain-like [KO:K10374]
104300378  TPM4; tropomyosin alpha-4 chain isoform X1 [KO:K10375]
Reference
  Authors
Hirokawa N, Niwa S, Tanaka Y
  Title
Molecular motors in neurons: transport mechanisms and roles in brain function, development, and disease.
  Journal
Neuron 68:610-38 (2010)
DOI:10.1016/j.neuron.2010.09.039
Reference
PMID:25470043 (PDB:4RH7)
  Authors
Schmidt H, Zalyte R, Urnavicius L, Carter AP
  Title
Structure of human cytoplasmic dynein-2 primed for its power stroke.
  Journal
Nature 518:435-438 (2015)
DOI:10.1038/nature14023
Reference
PMID:22398446 (PDB:3VKG 3VKH)
  Authors
Kon T, Oyama T, Shimo-Kon R, Imamula K, Shima T, Sutoh K, Kurisu G
  Title
The 2.8 A crystal structure of the dynein motor domain.
  Journal
Nature 484:345-50 (2012)
DOI:10.1038/nature10955
Reference
PMID:22997337 (PDB:3J1T 3J1U)
  Authors
Redwine WB, Hernandez-Lopez R, Zou S, Huang J, Reck-Peterson SL, Leschziner AE
  Title
Structural basis for microtubule binding and release by dynein.
  Journal
Science 337:1532-1536 (2012)
DOI:10.1126/science.1224151
Reference
  Authors
Gibbs KL, Greensmith L, Schiavo G
  Title
Regulation of Axonal Transport by Protein Kinases.
  Journal
Trends Biochem Sci 40:597-610 (2015)
DOI:10.1016/j.tibs.2015.08.003
Reference
PMID:28602352 (PDB:5NUG 5NVS 5NVU 5NW4)
  Authors
Zhang K, Foster HE, Rondelet A, Lacey SE, Bahi-Buisson N, Bird AW, Carter AP
  Title
Cryo-EM Reveals How Human Cytoplasmic Dynein Is Auto-inhibited and Activated.
  Journal
Cell 169:1303-1314.e18 (2017)
DOI:10.1016/j.cell.2017.05.025
Reference
PMID:25814576 (PDB:5ADX 5AFR 5AFU)
  Authors
Urnavicius L, Zhang K, Diamant AG, Motz C, Schlager MA, Yu M, Patel NA, Robinson CV, Carter AP
  Title
The structure of the dynactin complex and its interaction with dynein.
  Journal
Science 347:1441-1446 (2015)
DOI:10.1126/science.aaa4080
Reference
PMID:29420470 (PDB:5OWO 6F1T 6F1U 6F1V 6F1Y 6F1Z 6F38 6F3A)
  Authors
Urnavicius L, Lau CK, Elshenawy MM, Morales-Rios E, Motz C, Yildiz A, Carter AP
  Title
Cryo-EM shows how dynactin recruits two dyneins for faster movement.
  Journal
Nature 554:202-206 (2018)
DOI:10.1038/nature25462
Reference
  Authors
Reck-Peterson SL, Redwine WB, Vale RD, Carter AP
  Title
The cytoplasmic dynein transport machinery and its many cargoes.
  Journal
Nat Rev Mol Cell Biol 19:382-398 (2018)
DOI:10.1038/s41580-018-0004-3
Reference
PMID:23434508 (PDB:3J2U)
  Authors
Asenjo AB, Chatterjee C, Tan D, DePaoli V, Rice WJ, Diaz-Avalos R, Silvestry M, Sosa H
  Title
Structural model for tubulin recognition and deformation by kinesin-13 microtubule depolymerases.
  Journal
Cell Rep 3:759-68 (2013)
DOI:10.1016/j.celrep.2013.01.030
Reference
PMID:10338210 (PDB:1B7T)
  Authors
Houdusse A, Kalabokis VN, Himmel D, Szent-Gyorgyi AG, Cohen C
  Title
Atomic structure of scallop myosin subfragment S1 complexed with MgADP: a novel conformation of the myosin head.
  Journal
Cell 97:459-70 (1999)
DOI:10.1016/s0092-8674(00)80756-4
Reference
PMID:9428521 (PDB:3KIN)
  Authors
Kozielski F, Sack S, Marx A, Thormahlen M, Schonbrunn E, Biou V, Thompson A, Mandelkow EM, Mandelkow E
  Title
The crystal structure of dimeric kinesin and implications for microtubule-dependent motility.
  Journal
Cell 91:985-94 (1997)
DOI:10.1016/s0092-8674(00)80489-4
Reference
PMID:8316857 (PDB:2MYS)
  Authors
Rayment I, Rypniewski WR, Schmidt-Base K, Smith R, Tomchick DR, Benning MM, Winkelmann DA, Wesenberg G, Holden HM
  Title
Three-dimensional structure of myosin subfragment-1: a molecular motor.
  Journal
Science 261:50-8 (1993)
DOI:10.1126/science.8316857
Reference
  Authors
Parker D, Bryant Z, Delp SL
  Title
Coarse-Grained Structural Modeling of Molecular Motors Using Multibody Dynamics.
  Journal
Cell Mol Bioeng 2:366-374 (2009)
DOI:10.1007/s12195-009-0084-4
Reference
  Authors
Dominguez R, Holmes KC
  Title
Actin structure and function.
  Journal
Annu Rev Biophys 40:169-86 (2011)
DOI:10.1146/annurev-biophys-042910-155359
Reference
PMID:31919429 (PDB:6KN7 6KN8)
  Authors
Yamada Y, Namba K, Fujii T
  Title
Cardiac muscle thin filament structures reveal calcium regulatory mechanism.
  Journal
Nat Commun 11:153 (2020)
DOI:10.1038/s41467-019-14008-1
Reference
  Authors
Kruppa AJ, Buss F
  Title
Motor proteins at the mitochondria-cytoskeleton interface.
  Journal
J Cell Sci 134:239092 (2021)
DOI:10.1242/jcs.226084
KO pathway
ko04814   
LinkDB

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