KEGG   PATHWAY: ecj00020
Entry
ecj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli K-12 W3110
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ecj00020  Citrate cycle (TCA cycle)
ecj00020

Module
ecj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ecj00020]
ecj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ecj00020]
ecj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ecj00020]
ecj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ecj00020]
ecj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ecj00020]
Other DBs
GO: 0006099
Organism
Escherichia coli K-12 W3110 [GN:ecj]
Gene
JW0710  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
JW1268  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
JW5103  ybhJ; predicted hydratase [KO:K01681] [EC:4.2.1.3]
JW0114  acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
JW1122  icd; isocitrate dehydrogenase, specific for NADP+ [KO:K00031] [EC:1.1.1.42]
JW0715  sucA; 2-oxoglutarate decarboxylase, thiamin-requiring [KO:K00164] [EC:1.2.4.2]
JW0716  sucB; dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
JW0112  lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes [KO:K00382] [EC:1.8.1.4]
JW0718  sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K01902] [EC:6.2.1.5]
JW0717  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
JW0713  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JW0714  sdhB; succinate dehydrogenase, FeS subunit [KO:K00240] [EC:1.3.5.1]
JW0711  sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00241]
JW0712  sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00242]
JW4115  frdA; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
JW4114  frdB; fumarate reductase (anaerobic), Fe-S subunit [KO:K00245] [EC:1.3.5.1]
JW4113  frdC; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00246]
JW4112  frdD; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00247]
JW1604  fumA; aerobic Class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
JW4083  fumB; anaerobic class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
JW1603  fumC; fumarate hydratase (fumarase C), aerobic Class II [KO:K01679] [EC:4.2.1.2]
JW1665  ydhZ; hypothetical protein [KO:K01675] [EC:4.2.1.2]
JW2896  yggD; predicted DNA-binding transcriptional regulator [KO:K01774] [EC:4.2.1.2]
JW3205  mdh; malate dehydrogenase, NAD(P)-binding [KO:K00024] [EC:1.1.1.37]
JW2198  mqo; malate dehydrogenase, FAD/NAD(P)-binding domain [KO:K00116] [EC:1.1.5.4]
JW3366  pck; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
JW0110  aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding [KO:K00163] [EC:1.2.4.1]
JW0111  aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 [KO:K00627] [EC:2.3.1.12]
JW1372  ydbK; fused predicted Fe-S subunit of pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ecj00010  Glycolysis / Gluconeogenesis
ecj00053  Ascorbate and aldarate metabolism
ecj00061  Fatty acid biosynthesis
ecj00071  Fatty acid degradation
ecj00190  Oxidative phosphorylation
ecj00220  Arginine biosynthesis
ecj00250  Alanine, aspartate and glutamate metabolism
ecj00280  Valine, leucine and isoleucine degradation
ecj00350  Tyrosine metabolism
ecj00470  D-Amino acid metabolism
ecj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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