KEGG   PATHWAY: gmu03430
Entry
gmu03430                    Pathway                                
Name
Mismatch repair - Girardinichthys multiradiatus (darkedged splitfin)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
gmu03430  Mismatch repair
gmu03430

Other DBs
GO: 0006298
Organism
Girardinichthys multiradiatus (darkedged splitfin) [GN:gmu]
Gene
124883162  single-stranded DNA-binding protein, mitochondrial [KO:K03111]
124882795  single-stranded DNA-binding protein, mitochondrial-like [KO:K03111]
124875611  pms2; mismatch repair endonuclease PMS2 [KO:K10858]
124859669  mlh1; DNA mismatch repair protein Mlh1 [KO:K08734]
124858861  msh6; DNA mismatch repair protein Msh6 [KO:K08737]
124874594  msh2; DNA mismatch repair protein Msh2 [KO:K08735]
124877721  msh3; DNA mismatch repair protein Msh3 [KO:K08736]
124884852  mlh3; DNA mismatch repair protein Mlh3 isoform X1 [KO:K08739]
124868196  rfc1; replication factor C subunit 1 [KO:K10754]
124873489  rfc4; replication factor C subunit 4 [KO:K10755]
124868128  rfc2; replication factor C subunit 2 [KO:K10755]
124876917  rfc3; replication factor C subunit 3 [KO:K10756]
124877700  rfc5; replication factor C subunit 5 [KO:K10756]
124877339  pcna; proliferating cell nuclear antigen [KO:K04802]
124858777  exo1; exonuclease 1 isoform X1 [KO:K10746] [EC:3.1.-.-]
124876730  replication protein A 70 kDa DNA-binding subunit-like isoform X1 [KO:K07466]
124883566  rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
124865311  rpa2; replication protein A 32 kDa subunit [KO:K10739]
124879613  replication protein A 32 kDa subunit-like isoform X1 [KO:K10739]
124879954  rpa3; replication protein A 14 kDa subunit [KO:K10740]
124863279  LOW QUALITY PROTEIN: DNA polymerase delta catalytic subunit-like [KO:K02327] [EC:2.7.7.7]
124864334  LOW QUALITY PROTEIN: DNA polymerase delta catalytic subunit-like [KO:K02327] [EC:2.7.7.7]
124877898  pold2; DNA polymerase delta subunit 2 [KO:K02328]
124870243  pold3; DNA polymerase delta subunit 3 [KO:K03504]
124867895  pold4; DNA polymerase delta subunit 4 [KO:K03505]
124870108  lig1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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