KEGG   PATHWAY: hfl00270
Entry
hfl00270                    Pathway                                
Name
Cysteine and methionine metabolism - Hyphococcus flavus
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
hfl00270  Cysteine and methionine metabolism
hfl00270

Module
hfl_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:hfl00270]
hfl_M00021  Cysteine biosynthesis, serine => cysteine [PATH:hfl00270]
hfl_M00035  Methionine degradation [PATH:hfl00270]
hfl_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:hfl00270]
Other DBs
GO: 0006534 0006555
Organism
Hyphococcus flavus [GN:hfl]
Gene
PUV54_09825  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
PUV54_14315  cysteine synthase A [KO:K01738] [EC:2.5.1.47]
PUV54_15650  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
PUV54_09985  cystathionine gamma-synthase [KO:K01758] [EC:4.4.1.1]
PUV54_02070  metC; cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
PUV54_14330  metC; cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
PUV54_10000  pyridoxal-phosphate dependent enzyme [KO:K01697] [EC:4.2.1.22]
PUV54_16555  metH; methionine synthase [KO:K00548] [EC:2.1.1.13]
PUV54_16560  homocysteine S-methyltransferase family protein [KO:K00548] [EC:2.1.1.13]
PUV54_05575  metK; methionine adenosyltransferase [KO:K00789] [EC:2.5.1.6]
PUV54_07075  fused MFS/spermidine synthase [KO:K00797] [EC:2.5.1.16]
PUV54_13190  hypothetical protein [KO:K01243] [EC:3.2.2.9]
PUV54_14845  S-methyl-5'-thioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]
PUV54_11530  pgeF; peptidoglycan editing factor PgeF [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
PUV54_09415  aspartate/tyrosine/aromatic aminotransferase [KO:K00832] [EC:2.6.1.57]
PUV54_01270  cystathionine gamma-synthase family protein [KO:K01761] [EC:4.4.1.11]
PUV54_14570  GAF domain-containing protein [KO:K08968] [EC:1.8.4.14]
PUV54_10150  DNA cytosine methyltransferase [KO:K00558] [EC:2.1.1.37]
PUV54_10985  ahcY; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
PUV54_09910  aspartate kinase [KO:K00928] [EC:2.7.2.4]
PUV54_11095  aspartate kinase [KO:K00928] [EC:2.7.2.4]
PUV54_04465  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
PUV54_12885  hypothetical protein [KO:K00003] [EC:1.1.1.3]
PUV54_12875  homoserine O-succinyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
PUV54_15380  alpha/beta fold hydrolase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
PUV54_12880  metB; cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
PUV54_14305  branched-chain amino acid transaminase [KO:K00826] [EC:2.6.1.42]
PUV54_04765  glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]
PUV54_06670  gshB; glutathione synthase [KO:K01920] [EC:6.3.2.3]
PUV54_11500  pyridoxal phosphate-dependent aminotransferase [KO:K00812] [EC:2.6.1.1]
PUV54_14320  sseA; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
PUV54_16240  amino acid racemase [KO:K25316] [EC:5.1.1.10]
PUV54_07210  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PUV54_12785  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
PUV54_04080  serA; phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
PUV54_04085  phosphoserine transaminase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01102  O-Phospho-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
hfl00010  Glycolysis / Gluconeogenesis
hfl00250  Alanine, aspartate and glutamate metabolism
hfl00260  Glycine, serine and threonine metabolism
hfl00290  Valine, leucine and isoleucine biosynthesis
hfl00430  Taurine and hypotaurine metabolism
hfl00480  Glutathione metabolism
hfl00620  Pyruvate metabolism
hfl00640  Propanoate metabolism
hfl00770  Pantothenate and CoA biosynthesis
hfl00900  Terpenoid backbone biosynthesis
hfl00920  Sulfur metabolism
KO pathway
ko00270   
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