KEGG   PATHWAY: jas00020
Entry
jas00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Janthinobacterium tructae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
jas00020  Citrate cycle (TCA cycle)
jas00020

Module
jas_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:jas00020]
jas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:jas00020]
jas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:jas00020]
jas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:jas00020]
jas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:jas00020]
Other DBs
GO: 0006099
Organism
Janthinobacterium tructae [GN:jas]
Gene
FJQ89_04655  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
FJQ89_11190  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
FJQ89_08580  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
FJQ89_11240  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
FJQ89_06445  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FJQ89_25285  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FJQ89_11165  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FJQ89_11160  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FJQ89_17550  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FJQ89_11150  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FJQ89_13240  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FJQ89_15730  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FJQ89_15735  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FJQ89_11265  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
FJQ89_11205  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FJQ89_11200  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FJQ89_11215  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
FJQ89_11210  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
FJQ89_23690  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FJQ89_24345  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FJQ89_11225  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FJQ89_14815  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
FJQ89_17345  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
FJQ89_13250  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FJQ89_13245  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
jas00010  Glycolysis / Gluconeogenesis
jas00053  Ascorbate and aldarate metabolism
jas00061  Fatty acid biosynthesis
jas00071  Fatty acid degradation
jas00190  Oxidative phosphorylation
jas00220  Arginine biosynthesis
jas00250  Alanine, aspartate and glutamate metabolism
jas00280  Valine, leucine and isoleucine degradation
jas00350  Tyrosine metabolism
jas00470  D-Amino acid metabolism
jas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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