KEGG   PATHWAY: lak00270
Entry
lak00270                    Pathway                                
Name
Cysteine and methionine metabolism - Lingula anatina
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
lak00270  Cysteine and methionine metabolism
lak00270

Module
lak_M00035  Methionine degradation [PATH:lak00270]
lak_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:lak00270]
Other DBs
GO: 0006534 0006555
Organism
Lingula anatina [GN:lak]
Gene
106167192  cysteine synthase 1 [KO:K01738] [EC:2.5.1.47]
106162721  cysteine synthase 1 isoform X1 [KO:K01738] [EC:2.5.1.47]
106172713  cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
106178728  kynurenine--oxoglutarate transaminase 3-like [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
106178736  kynurenine--oxoglutarate transaminase 3 isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
106177683  kynurenine--oxoglutarate transaminase 3-like [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
106161612  cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
106166449  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
106171079  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
106171080  betaine--homocysteine S-methyltransferase 1 isoform X1 [KO:K00544] [EC:2.1.1.5]
106171100  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
106167822  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
106178981  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
106179201  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
106156503  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
106166038  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
106156809  methionine synthase [KO:K00548] [EC:2.1.1.13]
106166473  methionine adenosyltransferase 2 subunit beta [KO:K00789] [EC:2.5.1.6]
106158552  methionine adenosyltransferase 2 subunit beta-like [KO:K00789] [EC:2.5.1.6]
106160641  S-adenosylmethionine synthase isoform X1 [KO:K00789] [EC:2.5.1.6]
106152106  S-adenosylmethionine decarboxylase proenzyme isoform X1 [KO:K01611] [EC:4.1.1.50]
106161229  spermidine synthase [KO:K00797] [EC:2.5.1.16]
106150669  spermine synthase [KO:K00802] [EC:2.5.1.22]
106156768  spermine synthase-like [KO:K00802] [EC:2.5.1.22]
106170740  spermine synthase [KO:K00802] [EC:2.5.1.22]
106157994  spermine synthase [KO:K00802] [EC:2.5.1.22]
106180084  uncharacterized protein LOC106180084 [KO:K00899] [EC:2.7.1.100]
106169969  uncharacterized protein LOC106169969 isoform X1 [KO:K00899] [EC:2.7.1.100]
106171009  S-methyl-5'-thioadenosine phosphorylase-like [KO:K00772] [EC:2.4.2.28]
106165023  S-methyl-5'-thioadenosine phosphorylase-like [KO:K00772] [EC:2.4.2.28]
106152669  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
106159202  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase isoform X1 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
106178379  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase-like [KO:K08967] [EC:1.13.11.53 1.13.11.54]
106161531  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
106160540  tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
106167602  glycine N-methyltransferase isoform X1 [KO:K00552] [EC:2.1.1.20]
106166632  DNA (cytosine-5)-methyltransferase PliMCI [KO:K00558] [EC:2.1.1.37]
106168003  adenosylhomocysteinase B-like [KO:K01251] [EC:3.13.2.1]
106176757  S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
106158374  adenosylhomocysteinase B-like [KO:K01251] [EC:3.13.2.1]
106172139  branched-chain-amino-acid aminotransferase, cytosolic [KO:K00826] [EC:2.6.1.42]
106163654  alanine--glyoxylate aminotransferase 2, mitochondrial-like [KO:K00827] [EC:2.6.1.44 2.6.1.40]
106153380  glutamate--cysteine ligase catalytic subunit-like [KO:K11204] [EC:6.3.2.2]
106153381  glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
106179141  glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
106181952  glutamate--cysteine ligase catalytic subunit-like [KO:K11204] [EC:6.3.2.2]
106161623  glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
106153049  glutamate--cysteine ligase regulatory subunit-like [KO:K11205]
106164759  glutamate--cysteine ligase regulatory subunit [KO:K11205]
106153540  glutathione synthetase [KO:K21456] [EC:6.3.2.3]
106153541  glutathione synthetase-like [KO:K21456] [EC:6.3.2.3]
106173950  glutathione synthetase-like [KO:K21456] [EC:6.3.2.3]
106153182  cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
106176584  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
106175723  aspartate aminotransferase, mitochondrial isoform X1 [KO:K14455] [EC:2.6.1.1]
106181060  thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
106181191  thiosulfate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
106167247  thiosulfate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
106164944  thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
106174293  bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial [KO:K05396] [EC:4.4.1.15]
106157785  bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like [KO:K05396] [EC:4.4.1.15]
106157786  bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like [KO:K05396] [EC:4.4.1.15]
106176006  bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial [KO:K05396] [EC:4.4.1.15]
106171891  putative D-cysteine desulfhydrase 1, mitochondrial [KO:K05396] [EC:4.4.1.15]
106171889  bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like [KO:K05396] [EC:4.4.1.15]
106154959  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
106159255  malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
106154628  serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
106154630  serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
106168268  D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
106172803  D-3-phosphoglycerate dehydrogenase-like [KO:K00058] [EC:1.1.1.95 1.1.1.399]
106155397  phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
lak00010  Glycolysis / Gluconeogenesis
lak00250  Alanine, aspartate and glutamate metabolism
lak00260  Glycine, serine and threonine metabolism
lak00290  Valine, leucine and isoleucine biosynthesis
lak00430  Taurine and hypotaurine metabolism
lak00480  Glutathione metabolism
lak00620  Pyruvate metabolism
lak00640  Propanoate metabolism
lak00770  Pantothenate and CoA biosynthesis
lak00900  Terpenoid backbone biosynthesis
lak00920  Sulfur metabolism
KO pathway
ko00270   
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