KEGG   PATHWAY: lhk00020
Entry
lhk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Laribacter hongkongensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lhk00020  Citrate cycle (TCA cycle)
lhk00020

Module
lhk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lhk00020]
lhk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lhk00020]
lhk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lhk00020]
lhk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lhk00020]
Other DBs
GO: 0006099
Organism
Laribacter hongkongensis [GN:lhk]
Gene
LHK_02417  gltA; GltA [KO:K01647] [EC:2.3.3.1]
LHK_02308  Citrate synthase [KO:K01659] [EC:2.3.3.5]
LHK_02153  acnA; AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
LHK_02151  acnB; AcnB [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LHK_00368  icd1; Icd1 [KO:K00031] [EC:1.1.1.42]
LHK_02416  kgd; Kgd [KO:K00164] [EC:1.2.4.2]
LHK_02415  sucB; SucB [KO:K00658] [EC:2.3.1.61]
LHK_02413  lpdA2; LpdA2 [KO:K00382] [EC:1.8.1.4]
LHK_01492  Probable dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LHK_00131  lpdA1; LpdA1 [KO:K00382] [EC:1.8.1.4]
LHK_02411  sucD; SucD [KO:K01902] [EC:6.2.1.5]
LHK_02412  sucC; SucC [KO:K01903] [EC:6.2.1.5]
LHK_02849  Acetyl-CoA hydrolase/transferase [KO:K18118] [EC:2.8.3.18]
LHK_02419  sdhA; SdhA [KO:K00239] [EC:1.3.5.1]
LHK_02418  sdhB; SdhB [KO:K00240] [EC:1.3.5.1]
LHK_02421  sdhC; SdhC [KO:K00241]
LHK_02420  sdhD; SdhD [KO:K00242]
LHK_02341  frdA; FrdA [KO:K00233] [EC:1.3.5.1 7.1.1.12]
LHK_02342  Succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K25995] [EC:1.3.5.1 7.1.1.12]
LHK_02340  Fumarate reductase respiratory complex, transmembrane subunit [KO:K25996]
LHK_02542  fumB; FumB [KO:K01676] [EC:4.2.1.2]
LHK_00495  Fumarate hydratase, class II precursor [KO:K01679] [EC:4.2.1.2]
LHK_02423  mdh; Mdh [KO:K00024] [EC:1.1.1.37]
LHK_00133  aceE; AceE [KO:K00163] [EC:1.2.4.1]
LHK_00132  aceF; AceF [KO:K00627] [EC:2.3.1.12]
LHK_01443  Pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lhk00010  Glycolysis / Gluconeogenesis
lhk00061  Fatty acid biosynthesis
lhk00071  Fatty acid degradation
lhk00190  Oxidative phosphorylation
lhk00220  Arginine biosynthesis
lhk00250  Alanine, aspartate and glutamate metabolism
lhk00280  Valine, leucine and isoleucine degradation
lhk00350  Tyrosine metabolism
lhk00470  D-Amino acid metabolism
lhk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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