KEGG   PATHWAY: msex03008
Entry
msex03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Manduca sexta (tobacco hornworm)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
msex03008  Ribosome biogenesis in eukaryotes
msex03008

Organism
Manduca sexta (tobacco hornworm) [GN:msex]
Gene
115451691  casein kinase II subunit beta [KO:K03115]
115452084  casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
115444784  nucleolar protein 6 isoform X1 [KO:K14544]
115447828  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
115454293  WD repeat-containing protein 43 [KO:K14546]
115440020  U3 small nucleolar RNA-associated protein 4 homolog isoform X1 [KO:K14548]
115446818  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
115449628  HEAT repeat-containing protein 1 [KO:K14550]
115456140  WD repeat-containing protein 75 [KO:K14552]
115445563  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
115453482  WD repeat-containing protein 36 [KO:K14554]
115440367  LOW QUALITY PROTEIN: transducin beta-like protein 3 [KO:K14555]
119189100  LOW QUALITY PROTEIN: transducin beta-like protein 3 [KO:K14555]
115440740  WD repeat-containing protein 3 [KO:K14556]
115443795  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
115442011  periodic tryptophan protein 2 homolog isoform X1 [KO:K14558]
115449635  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
115448395  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
115447092  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
115454544  rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
115447100  nucleolar protein 56 [KO:K14564]
115454909  nucleolar protein 58 [KO:K14565]
115446744  nucleolar protein 58 [KO:K14565]
115447802  NHP2-like protein 1 [KO:K12845]
115455128  H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
115449447  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
115445364  H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
115450220  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
115447670  rRNA-processing protein FCF1 homolog [KO:K14566]
115440201  U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
115441638  ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
115452379  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
115445928  ribosome biogenesis protein BMS1 homolog [KO:K14569]
115441400  RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
115446555  probable RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
115439988  ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
115449519  ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
119193159  ribonuclease P/MRP protein subunit POP5-like [KO:K03537] [EC:3.1.26.5]
115442340  ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
115443143  ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
115439843  ribonuclease P protein subunit p20 isoform X1 [KO:K14527] [EC:3.1.26.5]
115447610  LOW QUALITY PROTEIN: ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
115440776  uncharacterized protein LOC115440776 [KO:K14530] [EC:3.1.26.5]
115441168  uncharacterized protein LOC115441168 [KO:K14530] [EC:3.1.26.5]
115449474  RNA exonuclease 5 [KO:K14570] [EC:3.1.-.-]
119192427  LOW QUALITY PROTEIN: RNA exonuclease 5-like [KO:K14570] [EC:3.1.-.-]
115451098  RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
115456137  RNA exonuclease 3 isoform X1 [KO:K14570] [EC:3.1.-.-]
115440345  probable oligoribonuclease [KO:K13288] [EC:3.1.-.-]
115450479  5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
115449289  5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
119192403  LOW QUALITY PROTEIN: nucleolar GTP-binding protein 1-like [KO:K06943]
115439723  nucleolar GTP-binding protein 1 [KO:K06943]
115440039  nucleolar GTP-binding protein 2 [KO:K14537]
115450485  guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
115452169  nuclear valosin-containing protein-like [KO:K14571]
115444232  midasin [KO:K14572]
115450959  RNA-binding protein 28 [KO:K14573]
115444801  RNA-binding protein NOB1 isoform X1 [KO:K11883]
115442372  GTP-binding nuclear protein Ran [KO:K07936]
115448075  exportin-1 [KO:K14290]
115445937  60S ribosomal export protein NMD3 [KO:K07562]
115452022  nuclear RNA export factor 1 isoform X1 [KO:K14284]
115452170  nuclear RNA export factor 2 [KO:K14284]
115450492  nuclear RNA export factor 1 [KO:K14284]
115443419  NTF2-related export protein [KO:K14285]
115447536  eukaryotic translation initiation factor 6 [KO:K03264]
115442346  ribosome maturation protein SBDS [KO:K14574]
115446317  LOW QUALITY PROTEIN: elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
115446730  LOW QUALITY PROTEIN: large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
115444694  LOW QUALITY PROTEIN: ATPase family protein 2 homolog [KO:K14575]
115441477  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
115451091  LOW QUALITY PROTEIN: serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
115448312  serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
119191731  small subunit ribosomal RNA [KO:K01979]
119191735  large subunit ribosomal RNA [KO:K01982]
119191742  large subunit ribosomal RNA [KO:K01982]
119192608  large subunit ribosomal RNA [KO:K01982]
115443890  5S ribosomal RNA [KO:K01981]
115446535  small nucleolar RNA U3 [KO:K14483]
115446536  small nucleolar RNA U3 [KO:K14483]
115446537  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
msex03010  Ribosome
KO pathway
ko03008   
LinkDB

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