KEGG   PATHWAY: nnt04146
Entry
nnt04146                    Pathway                                
Name
Peroxisome - Nestor notabilis (Kea)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
nnt04146  Peroxisome
nnt04146

Other DBs
GO: 0005777
Organism
Nestor notabilis (Kea) [GN:nnt]
Gene
104401636  PEX16; peroxisomal biogenesis factor 16 [KO:K13335]
104399902  PEX3; peroxisomal biogenesis factor 3 [KO:K13336]
104407415  ABCD3; ATP-binding cassette sub-family D member 3 [KO:K05677] [EC:7.6.2.4]
104405216  PEX1; peroxisome biogenesis factor 1 [KO:K13338]
104408299  PEX26; LOW QUALITY PROTEIN: peroxisome assembly protein 26 [KO:K13340]
104408230  PEX7; peroxisomal biogenesis factor 7 [KO:K13341]
104404396  PEX5; peroxisomal biogenesis factor 5 [KO:K13342]
104411174  PEX5L; PEX5-related protein [KO:K13342]
104413769  PEX14; peroxisomal membrane protein PEX14 [KO:K13343]
104402407  PEX13; LOW QUALITY PROTEIN: peroxisome biogenesis factor 13 [KO:K13344]
104399431  PEX12; peroxisome assembly protein 12 [KO:K13345]
104400525  PEX10; peroxisome biogenesis factor 10 [KO:K13346]
104408511  PEX2; peroxisome biogenesis factor 2 [KO:K06664]
104413847  MPV17; protein Mpv17 [KO:K13348]
104401969  PXMP4; peroxisomal membrane protein 4 [KO:K13350]
104404224  PEX11A; peroxisomal membrane protein 11A [KO:K13351]
104400944  PEX11G; peroxisomal membrane protein 11C [KO:K13353]
104409643  SLC25A17; peroxisomal membrane protein PMP34 [KO:K13354]
104408971  HACL1; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
104412060  AMACR; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
104411754  PHYH; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
104403446  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 [KO:K00232] [EC:1.3.3.6]
104403666  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
104403304  ACOX2; peroxisomal acyl-coenzyme A oxidase 2 [KO:K10214] [EC:1.17.99.3]
104407165  HSD17B4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
104409378  non-specific lipid-transfer protein [KO:K08764] [EC:2.3.1.176]
104406607  LOW QUALITY PROTEIN: acyl-coenzyme A amino acid N-acyltransferase 2-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
104409816  EHHADH; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
104408324  ACAA1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
104408270  DECR2; LOW QUALITY PROTEIN: peroxisomal 2,4-dienoyl-CoA reductase [KO:K13237] [EC:1.3.1.124]
104401634  ABCD2; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
104401641  ABCD4; ATP-binding cassette sub-family D member 4 [KO:K05678] [EC:7.6.2.8]
104406954  SLC27A2; LOW QUALITY PROTEIN: very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
104412096  ACSL5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
104399778  ACSL6; long-chain-fatty-acid--CoA ligase 6 isoform X1 [KO:K01897] [EC:6.2.1.3]
104408509  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
104409288  ACSL3; long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
104400045  long-chain-fatty-acid--CoA ligase 1-like [KO:K01897] [EC:6.2.1.3]
104399346  PECR; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
104404423  ECI2; LOW QUALITY PROTEIN: enoyl-CoA delta isomerase 2, mitochondrial [KO:K13239] [EC:5.3.3.8]
104405777  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
104412985  NUDT12; peroxisomal NADH pyrophosphatase NUDT12 isoform X1 [KO:K03426] [EC:3.6.1.22]
104401494  NUDT13; nucleoside diphosphate-linked moiety X motif 13 [KO:K03426] [EC:3.6.1.22]
104410669  CRAT; carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
104407764  CROT; peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
104405692  MLYCD; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
104399146  GNPAT; dihydroxyacetone phosphate acyltransferase [KO:K00649] [EC:2.3.1.42]
104404180  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
104399276  fatty acyl-CoA reductase 1-like [KO:K13356] [EC:1.2.1.84]
104402911  MVK; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
104404711  AGXT; serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
104409262  DAO; D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
104413616  DDO; D-aspartate oxidase [KO:K00272] [EC:1.4.3.1]
104404569  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
104405783  PAOX; peroxisomal N(1)-acetyl-spermine/spermidine oxidase [KO:K00308] [EC:1.5.3.13]
104413794  LOW QUALITY PROTEIN: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [KO:K01640] [EC:4.1.3.4]
104411779  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic [KO:K01640] [EC:4.1.3.4]
104410258  HAO2; hydroxyacid oxidase 2 [KO:K11517] [EC:1.1.3.15]
104406731  HAO1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
104400126  CAT; catalase [KO:K03781] [EC:1.11.1.6]
104401050  superoxide dismutase [Cu-Zn]-like [KO:K04565] [EC:1.15.1.1]
104413806  SOD2; superoxide dismutase [Mn], mitochondrial isoform X1 [KO:K04564] [EC:1.15.1.1]
104407941  LOW QUALITY PROTEIN: nitric oxide synthase, inducible-like [KO:K13241] [EC:1.14.13.39]
104405241  peroxiredoxin-1 isoform X1 [KO:K13279] [EC:1.11.1.24]
104405265  EPHX2; bifunctional epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
104399746  GSTK1; glutathione S-transferase kappa 1 [KO:K13299] [EC:2.5.1.18]
104412088  XDH; xanthine dehydrogenase/oxidase isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
nnt00071  Fatty acid degradation
nnt00120  Primary bile acid biosynthesis
nnt00230  Purine metabolism
nnt00564  Glycerophospholipid metabolism
nnt00565  Ether lipid metabolism
nnt00830  Retinol metabolism
nnt00900  Terpenoid backbone biosynthesis
nnt03320  PPAR signaling pathway
KO pathway
ko04146   
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