KEGG   PATHWAY: pato00020
Entry
pato00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pectobacterium atrosepticum 21A
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pato00020  Citrate cycle (TCA cycle)
pato00020

Module
pato_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pato00020]
pato_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pato00020]
pato_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pato00020]
pato_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pato00020]
pato_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pato00020]
Other DBs
GO: 0006099
Organism
Pectobacterium atrosepticum 21A [GN:pato]
Gene
GZ59_41760  citrate synthase [KO:K01647] [EC:2.3.3.1]
GZ59_13880  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
GZ59_26580  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
GZ59_37740  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
GZ59_21180  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
GZ59_13930  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GZ59_13940  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
GZ59_37820  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
GZ59_13960  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
GZ59_13950  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
GZ59_13910  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GZ59_13920  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
GZ59_13890  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
GZ59_13900  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
GZ59_39680  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
GZ59_39690  frdB; fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
GZ59_39700  frdC; fumarate reductase 15 kDa hydrophobic protein [KO:K00246]
GZ59_39710  frdD; fumarate reductase 13 kDa hydrophobic protein [KO:K00247]
GZ59_08420  fumA; fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
GZ59_23000  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
GZ59_05880  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GZ59_30880  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
GZ59_41600  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
GZ59_37840  aceE; pyruvate dehydrogenase e1 component [KO:K00163] [EC:1.2.4.1]
GZ59_37830  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
GZ59_29610  nifJ; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
GZ59_07290  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pato00010  Glycolysis / Gluconeogenesis
pato00053  Ascorbate and aldarate metabolism
pato00061  Fatty acid biosynthesis
pato00071  Fatty acid degradation
pato00190  Oxidative phosphorylation
pato00220  Arginine biosynthesis
pato00250  Alanine, aspartate and glutamate metabolism
pato00280  Valine, leucine and isoleucine degradation
pato00350  Tyrosine metabolism
pato00470  D-Amino acid metabolism
pato00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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