KEGG   PATHWAY: pdf00470
Entry
pdf00470                    Pathway                                
Name
D-Amino acid metabolism - Clostridioides difficile 630Derm
Class
Metabolism; Metabolism of other amino acids
Pathway map
pdf00470  D-Amino acid metabolism
pdf00470

Other DBs
GO: 0046416
Organism
Clostridioides difficile 630Derm [GN:pdf]
Gene
CD630DERM_34630  alr2; Alanine racemase 2 [KO:K01775] [EC:5.1.1.1]
CD630DERM_14080  ddl; D-alanine--D-alanine ligase (D-alanylalaninesynthetase) (D-Ala-D-Ala ligase) [KO:K01921] [EC:6.3.2.4]
CD630DERM_28530  dltA; D-alanine--poly(phosphoribitol) ligase subunit1 [KO:K03367] [EC:6.1.1.13]
CD630DERM_28510  dltC; D-alanine--poly(phosphoribitol) ligase subunit 2(D-alanyl carrier protein) (DCP) [KO:K14188] [EC:6.1.1.13]
CD630DERM_20280  racX; putative aspartate racemase RacX [KO:K25316] [EC:5.1.1.10]
CD630DERM_22540  Asp/Glu racemase [KO:K25316] [EC:5.1.1.10]
CD630DERM_05580  glsA; Glutaminase (L-glutamine amidohydrolase) [KO:K01425] [EC:3.5.1.2]
CD630DERM_35620  murI; Glutamate racemase [KO:K01776] [EC:5.1.1.3]
CD630DERM_26530  murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)(D-glutamic acid-adding enzyme) [KO:K01925] [EC:6.3.2.9]
CD630DERM_13890  putative chloromuconate cycloisomerase [KO:K19802] [EC:5.1.1.20 5.1.1.25]
CD630DERM_25900  dapF; Diaminopimelate epimerase (DAP epimerase) [KO:K01778] [EC:5.1.1.7]
CD630DERM_20530  lysA; Diaminopimelate decarboxylase [KO:K01586] [EC:4.1.1.20]
CD630DERM_18080  Pyridoxal-dependent decarboxylase, group IVdecarboxylase family [KO:K01586] [EC:4.1.1.20]
CD630DERM_04420  ord; 2,4-diaminopentanoate dehydrogenase [KO:K21672] [EC:1.4.1.12 1.4.1.26]
CD630DERM_04480  orr; ornithine racemase [KO:K21898] [EC:5.1.1.12]
CD630DERM_04460  oraE; D-ornithine aminomutase E component [KO:K17898] [EC:5.4.3.5]
CD630DERM_04450  oraS; D-ornithine aminomutase S component [KO:K17899] [EC:5.4.3.5]
CD630DERM_32370  prdF; Proline racemase [KO:K01777] [EC:5.1.1.4]
CD630DERM_32440  prdA; D-proline reductase proprotein prdA [KO:K10793] [EC:1.21.4.1]
CD630DERM_32410  prdB; Proline reductase (selenocysteine) [KO:K10794] [EC:1.21.4.1]
Compound
C00022  Pyruvate
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00077  L-Ornithine
C00079  L-Phenylalanine
C00084  Acetaldehyde
C00097  L-Cysteine
C00133  D-Alanine
C00134  Putrescine
C00135  L-Histidine
C00148  L-Proline
C00166  Phenylpyruvate
C00188  L-Threonine
C00217  D-Glutamate
C00402  D-Aspartate
C00431  5-Aminopentanoate
C00433  2,5-Dioxopentanoate
C00515  D-Ornithine
C00624  N-Acetyl-L-glutamate
C00666  LL-2,6-Diaminoheptanedioate
C00680  meso-2,6-Diaminoheptanedioate
C00692  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739  D-Lysine
C00740  D-Serine
C00763  D-Proline
C00792  D-Arginine
C00793  D-Cysteine
C00819  D-Glutamine
C00820  D-Threonine
C00855  D-Methionine
C00993  D-Alanyl-D-alanine
C01110  5-Amino-2-oxopentanoic acid
C01157  Hydroxyproline
C01180  4-Methylthio-2-oxobutanoic acid
C01667  Bacitracin
C01672  Cadaverine
C01726  D-Lombricine
C02237  5-Oxo-D-proline
C02265  D-Phenylalanine
C02855  N-Phospho-D-lombricine
C03239  6-Amino-2-oxohexanoate
C03341  2-Amino-4-oxopentanoic acid
C03440  cis-4-Hydroxy-D-proline
C03564  1-Pyrroline-2-carboxylate
C03771  5-Guanidino-2-oxopentanoate
C03933  5-D-Glutamyl-D-glutamyl-peptide
C03943  (2R,4S)-2,4-Diaminopentanoate
C04260  O-D-Alanyl-poly(ribitol phosphate)
C04282  1-Pyrroline-4-hydroxy-2-carboxylate
C04457  D-Alanyl-alanyl-poly(glycerolphosphate)
C05161  (2R,5S)-2,5-Diaminohexanoate
C05620  N-Acetyl-D-phenylalanine
C05825  2-Amino-5-oxohexanoate
C05939  Linatine
C05941  2-Oxo-4-hydroxy-5-aminovalerate
C05942  Pyrrole-2-carboxylate
C06419  D-Histidine
C22024  Staphylopine
C22025  (2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611  N-Acetyl-D-glutamate
Reference
PMID:33788945
  Authors
Miyamoto T, Homma H
  Title
D-Amino acid metabolism in bacteria.
  Journal
J Biochem 170:5-13 (2021)
DOI:10.1093/jb/mvab043
Reference
PMID:27230378
  Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
  Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
  Journal
Science 352:1105-9 (2016)
DOI:10.1126/science.aaf1018
Related
pathway
pdf00010  Glycolysis / Gluconeogenesis
pdf00020  Citrate cycle (TCA cycle)
pdf00250  Alanine, aspartate and glutamate metabolism
pdf00260  Glycine, serine and threonine metabolism
pdf00270  Cysteine and methionine metabolism
pdf00300  Lysine biosynthesis
pdf00310  Lysine degradation
pdf00330  Arginine and proline metabolism
pdf00340  Histidine metabolism
pdf00360  Phenylalanine metabolism
pdf00550  Peptidoglycan biosynthesis
pdf00620  Pyruvate metabolism
KO pathway
ko00470   
LinkDB

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