KEGG   PATHWAY: pds00230
Entry
pds00230                    Pathway                                
Name
Purine metabolism - Photobacterium damselae subsp. damselae
Class
Metabolism; Nucleotide metabolism
Pathway map
pds00230  Purine metabolism
pds00230

Module
pds_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pds00230]
pds_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pds00230]
pds_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pds00230]
pds_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pds00230]
pds_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pds00230]
Other DBs
GO: 0006163 0042278
Organism
Photobacterium damselae subsp. damselae [GN:pds]
Gene
CAY62_15915  ADP-ribose pyrophosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
CAY62_01445  ADP-ribose diphosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
CAY62_00200  ADP compounds hydrolase NudE [KO:K08312] [EC:3.6.1.-]
CAY62_02205  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
CAY62_04105  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
CAY62_10430  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
CAY62_09740  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
CAY62_00515  phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
CAY62_10815  phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
CAY62_06890  phosphoribosylglycinamide formyltransferase 2 [KO:K08289] [EC:6.3.1.21]
CAY62_02995  phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
CAY62_10810  phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
CAY62_14470  5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
CAY62_14475  5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
CAY62_04945  phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
CAY62_09160  adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
CAY62_00520  bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
CAY62_03970  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
CAY62_16275  bifunctional metallophosphatase/5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
CAY62_17770  bifunctional metallophosphatase/5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
CAY62_10365  ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
CAY62_04020  inosine/guanosine kinase [KO:K00892] [EC:2.7.1.73]
CAY62_06125  inosine/guanosine kinase [KO:K00892] [EC:2.7.1.73]
CAY62_18870  purine-nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
CAY62_02210  purine-nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
CAY62_00530  hypothetical protein [KO:K09913] [EC:2.4.2.1 2.4.2.2]
CAY62_11360  hypothetical protein [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
CAY62_12110  hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
CAY62_02940  IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
CAY62_02880  nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
CAY62_02250  inosine/xanthosine triphosphatase [KO:K01529] [EC:3.6.1.73]
CAY62_11920  non-canonical purine NTP pyrophosphatase [KO:K01519] [EC:3.6.1.66]
CAY62_03210  xanthine phosphoribosyltransferase [KO:K00769] [EC:2.4.2.22]
CAY62_02945  GMP synthase (glutamine-hydrolyzing) [KO:K01951] [EC:6.3.5.2]
CAY62_19350  guanosine monophosphate reductase [KO:K00364] [EC:1.7.1.7]
CAY62_13540  guanylate kinase [KO:K00942] [EC:2.7.4.8]
CAY62_07725  ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [KO:K00525] [EC:1.17.4.1]
CAY62_04885  ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
CAY62_04880  ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
CAY62_17235  anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
CAY62_09625  dGTPase [KO:K01129] [EC:3.1.5.1]
CAY62_09620  5'-deoxynucleotidase [KO:K08722] [EC:3.1.3.89]
CAY62_13550  bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
CAY62_16215  phosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
CAY62_02695  exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
CAY62_14650  guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
CAY62_11650  GTP diphosphokinase [KO:K00951] [EC:2.7.6.5]
CAY62_14765  adenylate cyclase [KO:K05851] [EC:4.6.1.1]
CAY62_00905  adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
CAY62_18825  adenylosuccinate synthetase [KO:K01939] [EC:6.3.4.4]
CAY62_00065  adenosine deaminase [KO:K01488] [EC:3.5.4.4]
CAY62_11200  LOG family protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
CAY62_15390  adenosine deaminase [KO:K21053] [EC:3.5.4.2]
CAY62_01055  2',3'-cyclic-nucleotide 2'-phosphodiesterase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
CAY62_04005  adenylate kinase [KO:K00939] [EC:2.7.4.3]
CAY62_11645  nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
CAY62_01455  phosphodiesterase [KO:K03651] [EC:3.1.4.53]
CAY62_08270  phosphorylase [KO:K00988] [EC:2.7.7.5 2.7.7.53]
CAY62_18055  phosphorylase [KO:K00988] [EC:2.7.7.5 2.7.7.53]
CAY62_01225  bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [KO:K01525] [EC:3.6.1.41]
CAY62_01080  adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
CAY62_01070  sulfate adenylyltransferase subunit CysN [KO:K00956] [EC:2.7.7.4]
CAY62_01065  sulfate adenylyltransferase small subunit [KO:K00957] [EC:2.7.7.4]
CAY62_17985  urease subunit alpha [KO:K01428] [EC:3.5.1.5]
CAY62_17980  urease subunit beta [KO:K01429] [EC:3.5.1.5]
CAY62_17975  urease subunit gamma [KO:K01430] [EC:3.5.1.5]
CAY62_16740  carbamate kinase [KO:K00926] [EC:2.7.2.2]
CAY62_01510  carbamate kinase [KO:K00926] [EC:2.7.2.2]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
pds00030  Pentose phosphate pathway
pds00220  Arginine biosynthesis
pds00250  Alanine, aspartate and glutamate metabolism
pds00260  Glycine, serine and threonine metabolism
pds00340  Histidine metabolism
pds00630  Glyoxylate and dicarboxylate metabolism
pds00730  Thiamine metabolism
pds00740  Riboflavin metabolism
pds00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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